1. Tachinid Endoparasitoid Flies do not Rely on Domesticated Viruses, Unlike Multiple Hymenopteran Lineages
   2026/02/03 by Sara Oukkal, Benjamin Guinet, Paul D. N. Hebert +5 · 1 voice · 2 citations
   Agricultural and Biological Sciences · Immunology and Microbiology · #Domestication #Gene #Genome #Host (biology) #Insect #Insect symbiosis and bacterial influences #Insect-Plant Interactions and Control #Invertebrate Immune Response Mechanisms #Parasitoid #Viral evolution
2. Prokaryotic defense systems: Diversity and evolutionary adaptation
   2026/02/01 by Changjialian Yang, Luyao Gong, Jing Guo +1 · 2 voices
   Biochemistry, Genetics and Molecular Biology · Environmental Science · Immunology and Microbiology · #Acquired immune system #Adaptation (eye) #Bacteriophages and microbial interactions #Biological evolution #CRISPR and Genetic Engineering #Immune system #Innate immune system #Mechanism (biology) #Repertoire #Viral evolution #interferon and immune responses
3. Viro3D: a comprehensive database of virus protein structure predictions
   2025/09/16 by Ulad Litvin, Spyros Lytras, Alexander Jack +3 · 2 voices · 12 citations
   Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Divergence (linguistics) #Function (biology) #Inference #Mutation #Phylogenetic tree #Phylogenetics #Protein structure #RNA and protein synthesis mechanisms #Viral evolution #Viral protein #Virus #vaccines and immunoinformatics approaches
4. Codon Usage Evolution in Viruses: Implications for Survival and Pathogenicity
   2025/09/04 by Shaikh Kaleem, Ujwal Dahal, Shivani Devi +2 · 3 citations
   Agricultural and Biological Sciences · Environmental Science · Medicine · #Bacteriophages and microbial interactions #Biological evolution #Biology #Codon usage bias #Evolutionary biology #Gene #Genetics #Genome #Herpesvirus Infections and Treatments #Microbiology #Pathogenicity #Plant Virus Research Studies #Viral evolution #Virology
5. Uncovering hundreds of exogenous and endogenous RNA viral RdRp sequences amongst uncharacterized sequences in public protein databases
   2025/01/01 by Katherine A. Brown, Andrew E. Firth · 2 voices · 1 citation
   Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Animal Virus Infections Studies #Bacteriophages and microbial interactions #Genome #Phylogenetics #Plant virus #Polymerase #RNA #RNA and protein synthesis mechanisms #RNA polymerase #Viral evolution #Viral protein #Virus classification
6. Within-host genetic diversity of SARS-CoV-2 across animal species
   2024/12/29 by Sana Naderi, Selena M. Sagan, B. Jesse Shapiro · 1 voice · 2 citations
   Agricultural and Biological Sciences · Medicine · #Adaptation (eye) #Animal Virus Infections Studies #Biology #Evolutionary biology #Gene #Genetic diversity #Genetic variation #Genetics #Genome #Host (biology) #Host adaptation #Natural selection #Plant Virus Research Studies #Population #SARS-CoV-2 and COVID-19 Research #Selection (genetic algorithm) #Transmission (telecommunications) #Viral evolution
7. Identifying and prioritizing potential human-infecting viruses from their genome sequences
   2021/09/28 by Nardus Mollentze, Simon A. Babayan, Daniel G. Streicker · 1 citation
   Medicine · Agricultural and Biological Sciences · #Zoonotic diseases and public health #Viral gastroenteritis research and epidemiology #Animal Virus Infections Studies #Biology #Genome #Human virome #Coronavirus #Outbreak #Phylogenetic tree #Genomics #Viral evolution #Virology #Virus classification #Phylogenetics #Pandemic #Virus #Evolutionary biology #Computational biology #Genetics #Gene #Infectious disease (medical specialty) #Coronavirus disease 2019 (COVID-19) #Disease
8. The LUCA and its complex virome
   2020/07/14 by Mart Krupovic, Mart Krupovìč, Valerian V. Dolja +1 · 2 citations
   Biochemistry, Genetics and Molecular Biology · Environmental Science · #Ancestor #Archaea #Bacteriophages and microbial interactions #Biology #Evolution and Genetic Dynamics #Evolutionary biology #Extant taxon #Gene #Genetics #Genome #Genomics and Phylogenetic Studies #History #Human virome #Most recent common ancestor #Population #Sociology #Three-domain system #Viral evolution
9. Origins and Evolution of the Global RNA Virome
   2018/11/26 by Yuri I. Wolf, Darius Kazlauskas, Jaime Iranzo +5 · 2 citations
   Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Plant Virus Research Studies #Plant and Fungal Interactions Research #Insect-Plant Interactions and Control #Human virome #Biology #RNA #Genome #Metagenomics #Evolutionary biology #Viral evolution #Computational biology #Virus classification #Genetics #Virology #Gene
10. Understanding the evolution and spread of chikungunya virus in the Americas using complete genome sequences
    2017/01/01 by Nikita Sahadeo, Orchid M. Allicock, Pablo M. De Salazar +8 · 1 citation
    Medicine · Biochemistry, Genetics and Molecular Biology · #Mosquito-borne diseases and control #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Lineage (genetic) #Phylogenetic tree #Chikungunya #Clade #Biology #Evolutionary biology #Most recent common ancestor #Genotype #Phylogenetics #Outbreak #Viral evolution #Genome #Genetics #Virology #Gene
11. Viruses and cells intertwined since the dawn of evolution
    2015/10/16 by Julia Durzyńska, Anna Goździcka‐Józefiak · 1 citation
    Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Biology #Clade #Evolution and Genetic Dynamics #Evolutionary biology #Gene #Genetics #Genome #Giant Virus #Horizontal gene transfer #Human virome #Phylogenetics #Plant Virus Research Studies #Polyphyly #RNA #Viral evolution #Virology
12. A phylogenomic data-driven exploration of viral origins and evolution
    2015/09/04 by Arshan Nasir, Gustavo Caetano‐Anollés · 4 citations
    Environmental Science · Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Bacteriophages and microbial interactions #Plant Virus Research Studies #Genomics and Phylogenetic Studies #Biology #Viral evolution #Evolutionary biology #Genome #Proteome #Horizontal gene transfer #Tree of life (biology) #Phylogenetics #Replicon #Molecular evolution #Computational biology #Genetics #Gene
13. Origins and evolution of viruses of eukaryotes: The ultimate modularity
    2015/03/12 by Eugene V. Koonin, Valerian V. Dolja, Mart Krupovìč · 4 citations
    Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacterial virus #Bacteriophage #Bacteriophages and microbial interactions #Biology #DNA #Gene #Genetics #Genome #Giant Virus #Human virome #Plant Virus Research Studies #Plant and Fungal Interactions Research #RNA #Viral evolution
14. A reassessment of the evolutionary timescale of bat rabies viruses based upon glycoprotein gene sequences
    2013/07/09 by Natalia A. Kuzmina, Ivan V. Kuzmin, James A. Ellison +5 · 1 citation
    Immunology and Microbiology · Medicine · #Biology #Evolutionary biology #Gene #Genetics #Genome #Lyssavirus #Microbial infections and disease research #Molecular clock #Most recent common ancestor #Nucleoprotein #Phylogenetic tree #Rabies #Rabies epidemiology and control #Rabies virus #Rhabdoviridae #Streptococcal Infections and Treatments #Viral evolution #Virology
15. Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads
    2012/07/11 by Simon Roux, Mart Krupovìč, Axel Poulet +2 · 4 citations
    Environmental Science · Immunology and Microbiology · Agricultural and Biological Sciences · #Bacteriophages and microbial interactions #Microbial infections and disease research #Plant Virus Research Studies #Human virome #Biology #Horizontal gene transfer #Genome #Phylogenetic tree #Genetics #Prophage #Phylogenetics #Gene #Evolutionary biology #Gene family #Viral evolution #Bacteriophage #Escherichia coli
16. Genetic evolution of the neuraminidase of influenza A (H3N2) viruses from 1968 to 2009 and its correspondence to haemagglutinin evolution
    2012/06/21 by Kim B. Westgeest, Miranda de Graaf, Mathieu Fourment +12 · 27 citations
    Biochemistry, Genetics and Molecular Biology · Medicine · #Biology #Coronavirus disease 2019 (COVID-19) #Gene #Genetics #Genome #H5N1 genetic structure #Hemagglutinin (influenza) #Human influenza #Influenza Virus Research Studies #Neuraminidase #RNA and protein synthesis mechanisms #Respiratory viral infections research #Viral evolution #Virology #Virus
17. Recombination in Eukaryotic Single Stranded DNA Viruses
    2011/09/13 by Darren P. Martin, Philippe Biagini, Pierre Lefeuvre +3 · 1 citation
    Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Plant Virus Research Studies #Plant and Fungal Interactions Research #Bacteriophages and microbial interactions #Biology #Reassortment #Homologous recombination #Recombination #Genome #Viral evolution #Genetic recombination #Evolutionary biology #Virus #Genetics #DNA #Gene
18. Molecular Phylogenetics of the Lyssaviruses—Insights from a Coalescent Approach
    2011/01/01 by Susan A. Nadin‐Davis, Susan A. Nadin-Davis, Leslie A. Real · 1 citation
    Immunology and Microbiology · Medicine · #Biology #Coalescent theory #Evolutionary biology #Gene #Genetics #Genome #Leucocytozoon #Lyssavirus #Microbial infections and disease research #Phylogenetic tree #Phylogenetics #Population #Rabies #Rabies epidemiology and control #Rabies virus #Rhabdoviridae #Streptococcal Infections and Treatments #Viral evolution #Viral phylodynamics #Virology
19. Viral Evolution and Escape during Acute HIV‐1 Infection
    2010/09/16 by Christian L. Boutwell, Morgane Rolland, Joshua T. Herbeck +2 · 1 citation
    Immunology and Microbiology · Medicine · #HIV Research and Treatment #HIV/AIDS Research and Interventions #HIV/AIDS drug development and treatment #Immune system #Virology #Virus #Immune escape #Biology #Viral replication #Immunology #Human immunodeficiency virus (HIV) #Viral evolution #Transmission (telecommunications) #Immunity #Genetics #Gene #Genome
20. Viral Mutation Rates
    2010/07/21 by Rafael Sanjuán, Miguel Nebot, Nicola Chirico +2 · 1 citation
    Biochemistry, Genetics and Molecular Biology · Agricultural and Biological Sciences · #Evolution and Genetic Dynamics #Plant Virus Research Studies #CRISPR and Genetic Engineering #Biology #Mutation rate #Mutation #Indel #Genetics #Viral evolution #RNA #DNA #Genome #Virology #Virus #Gene #Single-nucleotide polymorphism #Genotype
21. Paleovirology—Modern Consequences of Ancient Viruses
    2010/02/08 by Michael Emerman, Harmit S. Malik · 1 citation
    Medicine · Environmental Science · Agricultural and Biological Sciences · #Viral gastroenteritis research and epidemiology #Bacteriophages and microbial interactions #Animal Virus Infections Studies #Biology #Viral evolution #Human virome #Genome #Virology #Host (biology) #Population #Evolutionary biology #Pandemic #Genetics #Gene #Coronavirus disease 2019 (COVID-19) #Infectious disease (medical specialty) #Disease
22. Концептуальное представление проблемы снижения потерь воды при охлаждении технологического оборудования
    2010/01/01 by Anne Sicard, Yannis Michalakis, Serafín Gutiérrez +5 · 1 citation
    Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Biology #Computer science #Evolution and Genetic Dynamics #Evolutionary biology #Gene #Genetics #Genome #Multipartite #Physics #Plant Virus Research Studies #Viral evolution #Virus
23. The Coevolution of Plants and Viruses
    2010/01/01 by Aurora Fraile, Fernando García‐Arenal, Fernando García-Arenal · 1 citation
    Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Biology #Coevolution #Ecology #Evolution and Genetic Dynamics #Evolutionary biology #Gene #Genetics #Genome #Host (biology) #Plant Parasitism and Resistance #Plant Virus Research Studies #Plant virus #Population #Resistance (ecology) #Viral evolution #Virology #Virulence #Virus
24. Using Non-Homogeneous Models of Nucleotide Substitution to Identify Host Shift Events: Application to the Origin of the 1918 ‘Spanish’ Influenza Pandemic Virus
    2009/09/28 by Mario dos Reis, Alan Hay, Richard A. Goldstein · 1 citation
    Medicine · Biochemistry, Genetics and Molecular Biology · #Influenza Virus Research Studies #RNA and protein synthesis mechanisms #Escherichia coli research studies #Biology #Phylogenetic tree #Pandemic #Host (biology) #Influenza A virus subtype H5N1 #Virology #Virus #Viral phylodynamics #Genome #Influenza pandemic #Influenza A virus #Viral evolution #Evolutionary biology #Phylogenetics #Genetics #Gene #Disease #Coronavirus disease 2019 (COVID-19) #Infectious disease (medical specialty)
25. The origin of viruses
    2009/07/31 by Patrick Forterre, David Prangishvili · 1 citation
    Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Ancestor #Bacteriophages and microbial interactions #Biology #Capsid #Evolutionary biology #Gene #Genetics #Genome #Giant Virus #Plant Virus Research Studies #Plant and Fungal Interactions Research #Viral evolution #Viral replication #Virology #Virus
26. Ten reasons to exclude viruses from the tree of life
    2009/03/09 by David Moreira, Purificación López‐García, Purificación López-García · 7 citations
    Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Biology #Ecology #Evolution and Genetic Dynamics #Evolutionary biology #Gene #Genetics #Genome #Giant Virus #History #Phylogenetics #Plant Virus Research Studies #The Renaissance #Tree of life (biology) #Viral evolution #Virology
27. Putative prophages related to lytic tailless marine dsDNA phage PM2 are widespread in the genomes of aquatic bacteria
    2007/01/01 by Mart Krupovìč, Dennis H. Bamford · 3 citations
    Environmental Science · #Archaea #Bacteria #Bacteriophage #Bacteriophages and microbial interactions #Biology #Comparative genomics #Escherichia coli #Evolutionary biology #Fecal contamination and water quality #Gene #Genetics #Genome #Genomics #Horizontal gene transfer #Human virome #Lysogenic cycle #Lytic cycle #Marine bacteriophage #Methane Hydrates and Related Phenomena #Prophage #Viral evolution #Viral replication #Virus
28. Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
    2006/02/22 by Lakshminarayan M. Iyer, S. Balaji, Eugene V. Koonin +1 · 2 citations
    Agricultural and Biological Sciences · Environmental Science · #Animal Virus Infections Studies #Bacteriophages and microbial interactions #Biology #Gene #Genetics #Genome #Giant Virus #Plant Virus Research Studies #Viral evolution #Virology
29. Characterization of the 1918 influenza virus polymerase genes
    2005/10/01 by Jeffery K. Taubenberger, Ann Reid, Ann H. Reid +4 · 4 citations
    Agricultural and Biological Sciences · Medicine · #Animal Disease Management and Epidemiology #Biology #Coronavirus disease 2019 (COVID-19) #Gene #Genetics #Genome #H5N1 genetic structure #Infectious disease (medical specialty) #Influenza A virus #Influenza A virus subtype H5N1 #Influenza Virus Research Studies #Phylogenetic tree #Polymerase #Reassortment #Viral Infections and Vectors #Viral evolution #Viral replication #Virology #Virus
30. Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses
    2003/09/18 by Elizabeth R. Chare, Ernest A. Gould, Edward C. Holmes · 28 citations
    Medicine · #Biology #Gene #Genetics #Genome #Phylogenetic tree #RNA #RNA virus #Recombination #Viral Infections and Outbreaks Research #Viral Infections and Vectors #Viral evolution #Virology #Virology and Viral Diseases #Virus #Virus classification

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