Simon Roux
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes
2020/12/21 by Stephen Nayfach, Antônio Pedro Camargo, Frederik Schulz +3 · 54 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Genomics and Phylogenetic Studies #Plant Virus Research Studies
- DRAM for distilling microbial metabolism to automate the curation of microbiome function
2020/07/22 by Michael Shaffer, Mikayla Borton, Bridget B. McGivern +15 · 43 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Bacteriophages and microbial interactions #Gut microbiota and health
- VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
2021/02/01 by Jiarong Guo, Benjamin Bolduc, Ahmed A. Zayed +8 · 43 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Environmental DNA in Biodiversity Studies #Genomics and Phylogenetic Studies
- Identification of mobile genetic elements with geNomad
2023/09/21 by Antônio Pedro Camargo, Simon Roux, Frederik Schulz +6 · 1 voice · 34 citations
Environmental Science · Biochemistry, Genetics and Molecular Biology · Agricultural and Biological Sciences · #Bacteriophages and microbial interactions #Genomics and Phylogenetic Studies #Plant Virus Research Studies
- Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
2020/12/01 by Alon Shaiber, Amy D. Willis, Tom O. Delmont +13 · 9 citations
Biochemistry, Genetics and Molecular Biology · Dentistry · #Genomics and Phylogenetic Studies #Gut microbiota and health #Oral microbiology and periodontitis research
- A functional microbiome catalogue crowdsourced from North American rivers
2024/11/20 by Mikayla Borton, Bridget B. McGivern, Kathryn Willi +27 · 1 voice · 3 citations
Environmental Science · Biochemistry, Genetics and Molecular Biology · #Microbial Community Ecology and Physiology #Environmental DNA in Biodiversity Studies #Gut microbiota and health
- Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
2024/11/01 by Peter Simmonds, Evelien M. Adriaenssens, Elliot J. Lefkowitz +29 · 3 citations
- A call for caution in the biological interpretation of viral auxiliary metabolic genes
2025/08/27 by Cody Martin, Joanne B. Emerson, Joanne Emerson +2 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · Medicine · #Bacteriophages and microbial interactions #Viral gastroenteritis research and epidemiology #Virus-based gene therapy research
- Planetary-scale metagenomic search reveals new patterns of CRISPR targeting
2025/06/12 by Simon Roux, Uri Neri, Brian Bushnell +9 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · Agricultural and Biological Sciences · #CRISPR and Genetic Engineering #Bacteriophages and microbial interactions #Insect symbiosis and bacterial influences
- Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient
2025/12/11 by Gareth Trubl, Simon Roux, Mikayla Borton +11 · 1 voice · 2 citations
Environmental Science · Earth and Planetary Sciences · #Bacteriophages and microbial interactions #Climate change and permafrost #Polar Research and Ecology
- Viromics approaches for the study of viral diversity and ecology in microbiomes
2025/07/21 by Simon Roux, Clement Coclet, Clément Coclet · 1 voice · 1 citation
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Plant Virus Research Studies #Plant and Fungal Interactions Research
- Comparison of short-read and long-read metagenome assemblies in a natural soil community highlights systematic bias in recovery of high-diversity populations
2025/10/07 by Maureen Berg, Taylor Reiter, Joanne Emerson +2 · 1 voice · 1 citation
Environmental Science · Biochemistry, Genetics and Molecular Biology · #Bacteriophages and microbial interactions #Genomics and Phylogenetic Studies #Plant and Fungal Interactions Research