- Deep amplicon sequencing as a powerful new tool to screen for sequence polymorphisms associated with anthelmintic resistance in parasitic nematode populations
2018/11/22 by Russell W. Avramenko, Elizabeth Redman, Elizabeth M. Redman +6 · 31 citations
Environmental Science · Immunology and Microbiology · Veterinary · #Amplicon #Anthelmintic #Biology #Deep sequencing #Drug resistance #Ecology #Gene #Genetics #Genome #Genotype #Haemonchus contortus #Helminth infection and control #Nematode #Parasite Biology and Host Interactions #Parasites and Host Interactions #Parasitology #Polymerase chain reaction #Pyrosequencing #Resistance (ecology) #Single-nucleotide polymorphism #Zoology
- VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs
2016/11/05 by Yi Zheng, Shan Gao, Chellappan Padmanabhan +9 · 6 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Biology #Computational biology #Computer science #Contig #Deep sequencing #Gene #Genetics #Genome #Genomics and Phylogenetic Studies #Identification (biology) #Pipeline (software) #Plant Virus Research Studies #Plant and Fungal Interactions Research #RNA #Small RNA #Transfer RNA #Virus
- Library Construction for Ancient Genomics: Single Strand or Double Strand?
2014/06/01 by E. Andrew Bennett, Diyendo Massilani, Giulia Lizzo +3 · 2 citations
Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · Environmental Science · #Forensic and Genetic Research #Archaeology and ancient environmental studies #Environmental DNA in Biodiversity Studies #Ancient DNA #DNA #DNA sequencing #Deep sequencing #DNA ligase #Ion semiconductor sequencing #Biology #Computational biology #Genomic library #Genome #Genomics #Illumina dye sequencing #genomic DNA #Library #Genetics #Base sequence #Gene
- Library construction for next-generation sequencing: Overviews and challenges
2014/02/01 by Steven R. Head, H. Kiyomi Komori, Sarah A. LaMere +5 · 3 citations
Biochemistry, Genetics and Molecular Biology · #Base sequence #Biology #Computational biology #Context (archaeology) #DNA #DNA sequencing #Deep sequencing #Gene #Genetics #Genome #Genomic library #Genomics #Genomics and Phylogenetic Studies #Massive parallel sequencing #RNA #RNA and protein synthesis mechanisms #RNA modifications and cancer
- Palindromic sequence impedes sequencing-by-ligation mechanism
2012/12/01 by Yu‐Feng Huang, Sheng-Chung Chen, Yih‐Shien Chiang +2 · 1 citation
Biochemistry, Genetics and Molecular Biology · #Genomics and Phylogenetic Studies #Bacterial Genetics and Biotechnology #Genomics and Rare Diseases #Palindrome #Palindromic sequence #DNA sequencing #Genetics #Biology #Sequence (biology) #Computational biology #Shotgun sequencing #DNA sequencer #Deep sequencing #Illumina dye sequencing #Computer science #Genome #DNA #Gene
- Towards quantitative metagenomics of wild viruses and other ultra‐low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
2012/06/20 by Melissa B. Duhaime, Li Deng, Bonnie T. Poulos +1 · 1 citation
Environmental Science · Biochemistry, Genetics and Molecular Biology · #Bacteriophages and microbial interactions #Genomics and Phylogenetic Studies #Environmental DNA in Biodiversity Studies #Metagenomics #Biology #Shotgun sequencing #Computational biology #DNA sequencing #Ion semiconductor sequencing #Deep sequencing #Multiple displacement amplification #Genome #DNA #Polymerase chain reaction #Genetics #DNA extraction #Gene
- A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
2012/01/01 by Michael A. Quail, Miriam Smith, Paul Coupland +6 · 4 citations
Biochemistry, Genetics and Molecular Biology · #Biology #Computational biology #Context (archaeology) #DNA sequencing #Deep sequencing #Gene #Genetics #Genome #Genomics and Phylogenetic Studies #Glycosylation and Glycoproteins Research #Illumina dye sequencing #Ion semiconductor sequencing #Molecular Biology Techniques and Applications #Personal genomics #Whole genome sequencing
- Technical Considerations for Reduced Representation Bisulfite Sequencing with Multiplexed Libraries
2012/01/01 by Aniruddha Chatterjee, Euan J. Rodger, Peter A. Stockwell +2 · 1 citation
Biochemistry, Genetics and Molecular Biology · #Biology #Bisulfite #Bisulfite sequencing #Computational biology #Computer science #DNA #DNA methylation #DNA sequencer #DNA sequencing #Deep sequencing #Epigenetics and DNA Methylation #Gene #Genetics #Genome #Illumina dye sequencing #Multiplexing #Pipeline (software) #Protocol (science) #RNA modifications and cancer #Single-cell and spatial transcriptomics #Telecommunications
- ConDeTri - A Content Dependent Read Trimmer for Illumina Data
2011/10/19 by Linnéa Smeds, Axel Künstner · 1 citation
Biochemistry, Genetics and Molecular Biology · #Genomics and Phylogenetic Studies #Biomedical Text Mining and Ontologies #Genomics and Rare Diseases #Hybrid genome assembly #Illumina dye sequencing #Computer science #DNA sequencing #Deep sequencing #Sequence assembly #Reference genome #Computational biology #Data mining #Trimming #Preprocessor #Genome #Biology #Genetics #Artificial intelligence #DNA #Transcriptome #Gene
- Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics
2010/02/08 by Stephen B. Beres, Ronan K. Carroll, Patrick R. Shea +15 · 1 citation
Medicine · #Streptococcal Infections and Treatments #Antimicrobial Resistance in Staphylococcus #Infective Endocarditis Diagnosis and Management #Biology #Genetics #Indel #Genome #Nonsynonymous substitution #Single-nucleotide polymorphism #Whole genome sequencing #Deep sequencing #Population #DNA sequencing #Genotype #Computational biology #Gene
- RNA-Seq: a revolutionary tool for transcriptomics
2008/11/18 by Zhong Wang, Mark Gerstein, M Snyder +1 · 16 citations
Biochemistry, Genetics and Molecular Biology · #Biology #Computational biology #DNA sequencing #De novo transcriptome assembly #Deep sequencing #Gene #Gene expression #Genetics #Genome #Genomics and Phylogenetic Studies #Molecular Biology Techniques and Applications #RNA #RNA and protein synthesis mechanisms #RNA-Seq #Transcriptome