- Autocycler: long-read consensus assembly for bacterial genomes
2025/08/25 by Ryan R. Wick, Benjamin P. Howden, Timothy P. Stinear · 2 voices · 30 citations
Biochemistry, Genetics and Molecular Biology · Engineering · Environmental Science · #Artificial intelligence #Automation #Bacterial Genetics and Biotechnology #Bacterial genome size #Bacteriophages and microbial interactions #Biology #Computational biology #Computer science #Contig #Data mining #Database #De Bruijn graph #De Bruijn sequence #Engineering #Gene #Genetics #Genome #Genomics and Phylogenetic Studies #Graph #Levenshtein distance #Nanopore sequencing #Programming language #Scalability #Sequence assembly #Software #Theoretical computer science
- A physical map for the Amborella trichopodagenome sheds light on the evolution of angiosperm genome structure
2011/05/27 by Andrea Zuccolo, John Bowers, James C. Estill +27 · 2 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Chromosomal and Genetic Variations #Genomics and Phylogenetic Studies #Plant Molecular Biology Research #Biology #Synteny #Genome #Phylogenetic tree #Contig #Phylogenomics #Genetics #Botany #Gene #Clade
- A Whole-Genome Assembly of Drosophila
2000/03/24 by Eugene W. Myers, Granger G. Sutton, Art L. Delcher +26 · 5 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Biology #Chromosomal and Genetic Variations #Chromosome #Computational biology #Contig #Drosophila (subgenus) #Drosophila melanogaster #Euchromatin #Evolutionary biology #Gene #Genetics #Genome #Genomics and Phylogenetic Studies #Heterochromatin #Plant Reproductive Biology #Sequence (biology) #Sequence assembly #Whole genome sequencing
- Characterization of a species-specific repetitive DNA from a highly endangered wild animal, Rhinoceros unicornis, and assessment of genetic polymorphism by microsatellite associated sequence amplification (MASA)
1999/03/01 by Sher Ali, Md. Asim Azfer, Md.Asim Azfer +7 · 1 voice · 3 citations
Biochemistry, Genetics and Molecular Biology · #Allele #Biology #Contig #Gene #Genetic diversity and population structure #Genetics #Genome #Genomics and Phylogenetic Studies #Microsatellite #Molecular Biology Techniques and Applications #Molecular biology #Repeated sequence #genomic DNA
- An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA
1994/01/01 by Peisen Zhang, Eric A. Schon, Stuart G. Fischer +4 · 1 citation
Biochemistry, Genetics and Molecular Biology · Mathematics · #DNA and Biological Computing #Genomics and Chromatin Dynamics #RNA Research and Splicing #Cosmid #Contig #Algorithm #Combinatorics #Computer science #Mathematics #Genetics #Biology #DNA #Gene #Genome