Mohammed Alser
- GenASM: A High-Performance, Low-Power Approximate String Matching\n Acceleration Framework for Genome Sequence Analysis
2020/09/16 by Damla Senol Cali, Gurpreet S. Kalsi, Cali, Damla Senol +29 · 8 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Hardware Architecture (cs.AR) #Network Packet Processing and Optimization
- TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering
2022/12/09 by Meryem Banu Cavlak, Gagandeep Singh, Cavlak, Meryem Banu +15 · 4 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Artificial Intelligence (cs.AI) #Cancer-related molecular mechanisms research #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Machine Learning (cs.LG)
- GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping
2022/09/18 by Haiyu Mao, Mohammed Alser, Mao, Haiyu +15 · 4 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #DNA and Biological Computing #Data Structures and Algorithms (cs.DS) #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Hardware Architecture (cs.AR)
- RawAlign: Accurate, Fast, and Scalable Raw Nanopore Signal Mapping via Combining Seeding and Alignment
2023/10/08 by Joël Lindegger, Lindegger, Joël, Can Fırtına +9 · 3 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · Engineering · #Algorithms and Data Compression #FOS: Biological sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Nanopore and Nanochannel Transport Studies #Quantitative Methods (q-bio.QM)
- MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
2024/06/27 by Nika Mansouri Ghiasi, Mohammad Sadrosadati, Ghiasi, Nika Mansouri +21 · 3 citations
Biochemistry, Genetics and Molecular Biology · #Distributed #FOS: Biological sciences #FOS: Computer and information sciences #Gene expression and cancer classification #Genomics (q-bio.GN) #Hardware Architecture (cs.AR) #Parallel #and Cluster Computing (cs.DC)
- High-throughput Pairwise Alignment with the Wavefront Algorithm using Processing-in-Memory
2022/04/05 by Safaa Diab, Diab, Safaa, Amir Nassereldine +9 · 1 citation
Computer Science · #Advanced Image and Video Retrieval Techniques #Blind Source Separation Techniques #Distributed #FOS: Computer and information sciences #Hardware Architecture (cs.AR) #Neural Networks and Reservoir Computing #Parallel #and Cluster Computing (cs.DC)
- IChannels: Exploiting Current Management Mechanisms to Create Covert Channels in Modern Processors
2021/06/09 by Jawad Haj-Yahya, Jeremie S. Kim, Haj-Yahya, Jawad +13 · 1 voice
Computer Science · #Cryptography and Security (cs.CR) #Distributed #FOS: Computer and information sciences #Hardware Architecture (cs.AR) #Parallel #and Cluster Computing (cs.DC) #cs.AR #cs.CR #cs.DC
- SIMDRAM: A Framework for Bit-Serial SIMD Processing Using DRAM
2020/12/22 by Nastaran Hajinazar, Hajinazar, Nastaran, Geraldo F. Oliveira +17 · 1 voice
Computer Science · #Distributed #Emerging Technologies (cs.ET) #FOS: Computer and information sciences #Hardware Architecture (cs.AR) #Parallel #and Cluster Computing (cs.DC) #cs.AR #cs.DC #cs.ET
- Shouji: A Fast and Efficient Pre-Alignment Filter for Sequence Alignment
2018/09/18 by Mohammed Alser, Hasan Hassan, Akash Kumar +2 · 1 voice
Computer Science · Biochemistry, Genetics and Molecular Biology · #cs.CE #cs.DS #q-bio.GN