Can Fırtına
- GenASM: A High-Performance, Low-Power Approximate String Matching\n Acceleration Framework for Genome Sequence Analysis
2020/09/16 by Damla Senol Cali, Cali, Damla Senol, Gurpreet S. Kalsi +29 · 6 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Hardware Architecture (cs.AR) #Network Packet Processing and Optimization
- TargetCall: Eliminating the Wasted Computation in Basecalling via Pre-Basecalling Filtering
2022/12/09 by Meryem Banu Cavlak, Cavlak, Meryem Banu, Gagandeep Singh +15 · 3 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Artificial Intelligence (cs.AI) #Cancer-related molecular mechanisms research #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Machine Learning (cs.LG)
- MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
2024/06/27 by Nika Mansouri Ghiasi, Ghiasi, Nika Mansouri, Mohammad Sadrosadati +21 · 2 citations
Biochemistry, Genetics and Molecular Biology · #Distributed #FOS: Biological sciences #FOS: Computer and information sciences #Gene expression and cancer classification #Genomics (q-bio.GN) #Hardware Architecture (cs.AR) #Parallel #and Cluster Computing (cs.DC)
- Swordfish: A Framework for Evaluating Deep Neural Network-based Basecalling using Computation-In-Memory with Non-Ideal Memristors
2023/10/06 by Taha Shahroodi, Shahroodi, Taha, Gagandeep Singh +15 · 1 citation
Biochemistry, Genetics and Molecular Biology · Engineering · #Advanced Memory and Neural Computing #CRISPR and Genetic Engineering #Emerging Technologies (cs.ET) #FOS: Biological sciences #FOS: Computer and information sciences #Ferroelectric and Negative Capacitance Devices #Genomics (q-bio.GN) #Hardware Architecture (cs.AR)
- Rawsamble: Overlapping and Assembling Raw Nanopore Signals using a Hash-based Seeding Mechanism
2024/10/23 by Can Fırtına, Firtina, Can, Maximilian Mordig +17 · 2 citations
Computer Science · Engineering · #FOS: Biological sciences #Genomics (q-bio.GN) #Nanopore and Nanochannel Transport Studies #Quantum-Dot Cellular Automata