- A unified lexicon of predictive DNA sequence motifs from ENCODE transcription factor binding and chromatin accessibility assays
2026/07/16 by Chang Min Yun, Salil Deshpande, Vivekanandan Ramalingam +7 · 1 voice
Biochemistry, Genetics and Molecular Biology · #Genomics and Chromatin Dynamics #Machine Learning in Bioinformatics #Chromatin Remodeling and Cancer #Chromatin #Sequence motif #ENCODE #Transcription factor #Motif (music) #Lexicon #DNA binding site #DNA #Binding site
- ARTEM server: an online tool for nucleic acid 3D motif searches, 3D structure superposition and structure-based alignment
2026/05/04 by Dominik Sordyl, Jan Cielesz, Davyd R. Bohdan +2 · 1 voice
Biochemistry, Genetics and Molecular Biology · Computer Science · Materials Science · #Computational Drug Discovery Methods #Enzyme Structure and Function #Nucleic acid #Nucleic acid structure #Protein Structure and Dynamics #Sequence alignment #Sequence motif #Structural motif #Superposition principle #Visualization #Web server
- GenomeQA: Benchmarking General Large Language Models for Genome Sequence Understanding
2026/04/07 by Weicai Long, Yusen Hou, Junning Feng +5 · 1 voice
Biochemistry, Genetics and Molecular Biology · Computer Science · #Benchmark (surveying) #Benchmarking #Biomedical Text Mining and Ontologies #DNA binding site #DNA sequencing #Exploit #Genomics #Genomics and Rare Diseases #Inference #Machine Learning in Bioinformatics #Sequence (biology) #Sequence motif #cs.CL #q-bio.GN
- Lentiviral single-cell MPRA of synthetic enhancers reveals motif affinity-based encoding of cell type specificity
2026/03/02 by Julia Rühle, Robert Frömel, Aina Bernal Martinez +3 · 1 voice
Biochemistry, Genetics and Molecular Biology · #CRISPR and Genetic Engineering #Cell #Enhancer #Gene #Gene expression #Genomics and Chromatin Dynamics #Motif (music) #Regulatory sequence #Reporter gene #Sequence motif #Single-cell and spatial transcriptomics #Transcription factor