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Zhangyang Gao

  1. A Survey on Generative Diffusion Model
    2022/09/06 by Hanqun Cao, Cheng Tan, Cao, Hanqun +12 · 1 voice · 55 citations
    Business, Management and Accounting · Computer Science · Medicine · Psychology · #Artificial Intelligence (cs.AI) #Artificial Intelligence in Healthcare and Education #Creativity in Education and Neuroscience #FOS: Computer and information sciences #Private Equity and Venture Capital #cs.AI
  2. SimVP: Simpler yet Better Video Prediction
    2022/06/09 by Zhangyang Gao, Cheng Tan, Gao, Zhangyang +5 · 23 citations
    Computer Science · #Artificial Intelligence (cs.AI) #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #Generative Adversarial Networks and Image Synthesis #Human Pose and Action Recognition #Multimodal Machine Learning Applications
  3. A Survey on Generative Diffusion Models
    2024/07/01 by Hanqun Cao, Cheng Tan, Zhangyang Gao +4 · 39 citations
  4. Temporal Attention Unit: Towards Efficient Spatiotemporal Predictive Learning
    2022/06/24 by Cheng Tan, Tan, Cheng, Zhangyang Gao +7 · 11 citations
    Computer Science · #Human Pose and Action Recognition #Domain Adaptation and Few-Shot Learning #Video Surveillance and Tracking Methods
  5. SimVPv2: Towards Simple yet Powerful Spatiotemporal Predictive Learning
    2022/11/22 by Cheng Tan, Zhangyang Gao, Tan, Cheng +5 · 10 citations
    Computer Science · #Domain Adaptation and Few-Shot Learning #Data Stream Mining Techniques #Machine Learning and Data Classification
  6. Self-supervised Learning on Graphs: Contrastive, Generative,or Predictive
    2021/05/16 by Lirong Wu, Wu, Lirong, Haitao Lin +7 · 6 citations
    Computer Science · #Advanced Graph Neural Networks #Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Machine Learning (cs.LG) #Sentiment Analysis and Opinion Mining #Text and Document Classification Technologies
  7. MLIP: Enhancing Medical Visual Representation with Divergence Encoder and Knowledge-guided Contrastive Learning
    2024/02/03 by Zhe Li, Laurence T. Yang, Li, Zhe +11 · 10 citations
    Computer Science · #AI in cancer detection #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #Image Retrieval and Classification Techniques
  8. Boosting the Power of Small Multimodal Reasoning Models to Match Larger Models with Self-Consistency Training
    2023/11/23 by Cheng Tan, Tan, Cheng, Jingxuan Wei +10 · 8 citations
    Computer Science · #Topic Modeling #Multimodal Machine Learning Applications #Natural Language Processing Techniques
  9. From AI for Science to Agentic Science: A Survey on Autonomous Scientific Discovery
    2025/08/18 by Jiaqi Wei, Yue-Jin Yang, Wei, Jiaqi +52 · 3 voices · 18 citations
    Computer Science · Decision Sciences · #Scientific Computing and Data Management #cs.LG
  10. Peer Review as A Multi-Turn and Long-Context Dialogue with Role-Based Interactions
    2024/06/09 by Cheng Tan, Dongxin Lyu, Tan, Cheng +13 · 9 citations
    Decision Sciences · #Artificial Intelligence (cs.AI) #Computation and Language (cs.CL) #FOS: Computer and information sciences #Interdisciplinary Research and Collaboration #Machine Learning (cs.LG)
  11. General Point Model with Autoencoding and Autoregressive
    2023/10/25 by Zhe Li, Zhangyang Gao, Li, Zhe +7 · 5 citations
    Materials Science · Computer Science · #Machine Learning in Materials Science #Advanced Neural Network Applications
  12. OpenSTL: A Comprehensive Benchmark of Spatio-Temporal Predictive Learning
    2023/06/20 by Cheng Tan, Siyuan Li, Tan, Cheng +13 · 4 citations
    Computer Science · #Anomaly Detection Techniques and Applications #Artificial Intelligence (cs.AI) #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #Time Series Analysis and Forecasting #Video Surveillance and Tracking Methods
  13. From Words to Structured Visuals: A Benchmark and Framework for Text-to-Diagram Generation and Editing
    2024/11/18 by Jingxuan Wei, Cheng Tan, Wei, Jingxuan +15 · 8 citations
    Computer Science · #Model-Driven Software Engineering Techniques
  14. Re-Dock: Towards Flexible and Realistic Molecular Docking with Diffusion Bridge
    2024/02/18 by Yufei Huang, Odin Zhang, Huang, Yufei +13 · 4 citations
    Computer Science · Engineering · #Artificial Intelligence (cs.AI) #Biomolecules (q-bio.BM) #Chemical Physics (physics.chem-ph) #FOS: Biological sciences #FOS: Computer and information sciences #FOS: Physical sciences #Machine Learning (cs.LG) #Molecular Communication and Nanonetworks #Molecular Junctions and Nanostructures #Quantum-Dot Cellular Automata
  15. Retrieval Meets Reasoning: Even High-school Textbook Knowledge Benefits Multimodal Reasoning
    2024/05/31 by Cheng Tan, Jingxuan Wei, Tan, Cheng +13 · 4 citations
    Psychology · Social Sciences · #Educational Strategies and Epistemologies #Education and Critical Thinking Development #Innovative Teaching and Learning Methods
  16. Protein 3D Graph Structure Learning for Robust Structure-based Protein Property Prediction
    2023/10/14 by Yufei Huang, Huang, Yufei, Siyuan Li +22 · 1 voice · 2 citations
    Biochemistry, Genetics and Molecular Biology · Computer Science · #Computational Drug Discovery Methods #Machine Learning in Bioinformatics #Protein Structure and Dynamics #cs.AI #cs.LG #q-bio.QM
  17. Enhancing Human-like Multi-Modal Reasoning: A New Challenging Dataset and Comprehensive Framework
    2023/07/24 by Jingxuan Wei, Wei, Jingxuan, Cheng Tan +13 · 2 citations
    Computer Science · #Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Multimodal Machine Learning Applications #Natural Language Processing Techniques #Topic Modeling
  18. UniIF: Unified Molecule Inverse Folding
    2024/05/29 by Zhangyang Gao, Gao, Zhangyang, Jue Wang +13 · 2 citations
    Biochemistry, Genetics and Molecular Biology · Materials Science · #Artificial Intelligence (cs.AI) #Chemical Synthesis and Analysis #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Quantitative Methods (q-bio.QM) #Synthesis and properties of polymers
  19. GraphMixup: Improving Class-Imbalanced Node Classification on Graphs by Self-supervised Context Prediction
    2021/06/21 by Lirong Wu, Haitao Lin, Wu, Lirong +7 · 1 citation
    Computer Science · #Advanced Graph Neural Networks #Artificial Intelligence (cs.AI) #Domain Adaptation and Few-Shot Learning #FOS: Computer and information sciences #Machine Learning (cs.LG) #Topic Modeling
  20. AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB
    2022/02/01 by Zhangyang Gao, Cheng Tan, Gao, Zhangyang +3 · 1 citation
    Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Microbial Metabolic Engineering and Bioproduction #Protein Structure and Dynamics #Quantitative Methods (q-bio.QM)
  21. Generative De Novo Protein Design with Global Context
    2022/04/21 by Cheng Tan, Zhangyang Gao, Tan, Cheng +5 · 1 citation
    Biochemistry, Genetics and Molecular Biology · #Protein Structure and Dynamics #Machine Learning in Bioinformatics #RNA and protein synthesis mechanisms
  22. SemiRetro: Semi-template framework boosts deep retrosynthesis prediction
    2022/02/12 by Zhangyang Gao, Cheng Tan, Gao, Zhangyang +5 · 1 citation
    Materials Science · Biochemistry, Genetics and Molecular Biology · #Machine Learning in Materials Science #Genomics and Phylogenetic Studies #Machine Learning in Bioinformatics
  23. DiffSDS: A language diffusion model for protein backbone inpainting under geometric conditions and constraints
    2023/01/22 by Zhangyang Gao, Cheng Tan, Gao, Zhangyang +3 · 1 citation
    Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #FOS: Biological sciences #FOS: Computer and information sciences #Genomics and Chromatin Dynamics #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Protein Structure and Dynamics #Quantitative Methods (q-bio.QM)
  24. Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective
    2022/12/02 by Cheng Tan, Tan, Cheng, Zhangyang Gao +8 · 1 citation
    Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Protein Structure and Dynamics #RNA and protein synthesis mechanisms
  25. Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer
    2023/04/21 by Cheng Tan, Zhangyang Gao, Tan, Cheng +8 · 1 citation
    Biochemistry, Genetics and Molecular Biology · Immunology and Microbiology · Medicine · #Artificial Intelligence (cs.AI) #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Glycosylation and Glycoproteins Research #Immunotherapy and Immune Responses #Machine Learning (cs.LG) #Monoclonal and Polyclonal Antibodies Research
  26. MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
    2024/11/04 by Cheng Tan, Tan, Cheng, Cao, Zhenxiao +14 · 2 citations
    Biochemistry, Genetics and Molecular Biology · Computer Science · #Biomolecules (q-bio.BM) #Computational Drug Discovery Methods #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Protein Degradation and Inhibitors
  27. ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search
    2025/06/01 by Xiaoxue Cheng, Liu, Mengdi, Zhangyang Gao +10 · 3 citations
    Biochemistry, Genetics and Molecular Biology · Engineering · #Advanced Materials and Mechanics #Biomolecules (q-bio.BM) #Computer Vision and Pattern Recognition (cs.CV) #FOS: Biological sciences #FOS: Computer and information sciences #Glycosylation and Glycoproteins Research #Machine Learning (cs.LG)
  28. A Teacher-Free Graph Knowledge Distillation Framework with Dual Self-Distillation
    2024/03/06 by Lirong Wu, Haitao Lin, Wu, Lirong +7 · 1 citation
    Computer Science · #Advanced Graph Neural Networks #FOS: Computer and information sciences #Machine Learning (cs.LG)
  29. PFMBench: Protein Foundation Model Benchmark
    2025/06/01 by Zhangyang Gao, Hao Wang, Gao, Zhangyang +15 · 2 citations
    Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #Bioinformatics and Genomic Networks #Biomedical Text Mining and Ontologies #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Microbial Metabolic Engineering and Bioproduction
  30. FoldToken2: Learning compact, invariant and generative protein structure language
    2024/06/11 by Zhangyang Gao, Gao, Zhangyang, Cheng Tan +3 · 1 citation
    Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #Biomedical Text Mining and Ontologies #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Protein Structure and Dynamics
  31. Advances of Deep Learning in Protein Science: A Comprehensive Survey
    2024/03/08 by Bozhen Hu, Hu, Bozhen, Cheng Tan +17 · 1 citation
    Biochemistry, Genetics and Molecular Biology · #Genetics, Bioinformatics, and Biomedical Research #Machine Learning in Bioinformatics #Cell Image Analysis Techniques
  32. SciForge: An AI-Native, Multimodal Workbench for Scientific Discovery
    2026/07/17 by SciForge Team, Zhangyang Gao, Minghao Fang +10
    #cs.AI