Hu, Bozhen

1. Generative De Novo Protein Design with Global Context
   2022/04/21 by Cheng Tan, Tan, Cheng, Zhangyang Gao +5 · 4 citations
   Biochemistry, Genetics and Molecular Biology · #Protein Structure and Dynamics #Machine Learning in Bioinformatics #RNA and protein synthesis mechanisms
2. RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design
   2023/01/25 by Tan, Cheng, Zhang, Yijie, Gao, Zhangyang +4 · 3 citations
   #Artificial Intelligence (cs.AI) #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG)
3. PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction
   2024/02/13 by Lirong Wu, Yufei Huang, Wu, Lirong +13 · 3 citations
   Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #Bioinformatics and Genomic Networks #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Microbial Metabolic Engineering and Bioproduction
4. Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer
   2023/04/21 by Cheng Tan, Tan, Cheng, Zhangyang Gao +8 · 2 citations
   Biochemistry, Genetics and Molecular Biology · Immunology and Microbiology · Medicine · #Artificial Intelligence (cs.AI) #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Glycosylation and Glycoproteins Research #Immunotherapy and Immune Responses #Machine Learning (cs.LG) #Monoclonal and Polyclonal Antibodies Research
5. Advances of Deep Learning in Protein Science: A Comprehensive Survey
   2024/03/08 by Bozhen Hu, Cheng Tan, Hu, Bozhen +17 · 2 citations
   Biochemistry, Genetics and Molecular Biology · #Genetics, Bioinformatics, and Biomedical Research #Machine Learning in Bioinformatics #Cell Image Analysis Techniques
6. MeToken: Uniform Micro-environment Token Boosts Post-Translational Modification Prediction
   2024/11/04 by Cheng Tan, Tan, Cheng, Zhangyang Gao +14 · 3 citations
   Biochemistry, Genetics and Molecular Biology · Computer Science · #Biomolecules (q-bio.BM) #Computational Drug Discovery Methods #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Protein Degradation and Inhibitors
7. PFMBench: Protein Foundation Model Benchmark
   2025/06/01 by Zhangyang Gao, Gao, Zhangyang, Hao Wang +15 · 2 citations
   Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #Bioinformatics and Genomic Networks #Biomedical Text Mining and Ontologies #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Microbial Metabolic Engineering and Bioproduction