Baele, Guy

1. piBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios
   2013/12/17 by Bielejec, Filip, Lemey, Philippe, Carvalho, Luiz Max +3 · 4 citations
   #FOS: Biological sciences #Populations and Evolution (q-bio.PE)
2. Inferring Heterogeneous Evolutionary Processes Through Time: from\n sequence substitution to phylogeography
   2013/09/12 by Filip Bielejec, Bielejec, Filip, Philippe Lemey +7 · 3 citations
   Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Computation (stat.CO) #Evolution and Paleontology Studies #FOS: Biological sciences #FOS: Computer and information sciences #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE)
3. Online Bayesian phylodynamic inference in BEAST with application to epidemic reconstruction
   2020/02/01 by Gill, Mandev S., Lemey, Philippe, Suchard, Marc A. +2 · 2 citations
   #FOS: Biological sciences #FOS: Computer and information sciences #Methodology (stat.ME) #Populations and Evolution (q-bio.PE)
4. Phylogenetic Factor Analysis
   2017/01/25 by Tolkoff, Max R., Alfaro, Michael L., Baele, Guy +2 · 1 citation
   #Applications (stat.AP) #Computation (stat.CO) #FOS: Computer and information sciences #Methodology (stat.ME)
5. On the importance of assessing topological convergence in Bayesian phylogenetic inference
   2024/02/18 by Marius Brusselmans, Luiz Max Carvalho, Brusselmans, Marius +17 · 2 voices · 2 citations
   #q-bio.PE #q-bio.GN #q-bio.QM
6. Massive parallelization boosts big Bayesian multidimensional scaling
   2019/05/11 by Holbrook, Andrew, Lemey, Philippe, Baele, Guy +4 · 1 citation
   #Computation (stat.CO) #FOS: Computer and information sciences
7. Efficient Bayesian Inference of General Gaussian Models on Large Phylogenetic Trees
   2020/03/23 by Bastide, Paul, Ho, Lam Si Tung, Baele, Guy +2 · 1 citation
   #Applications (stat.AP) #FOS: Biological sciences #FOS: Computer and information sciences #Populations and Evolution (q-bio.PE)
8. Gradients do grow on trees: a linear-time \cal O\hspace-0.2em( N )-dimensional gradient for statistical phylogenetics
   2019/05/29 by Xiang Ji, Zhenyu Zhang, Ji, Xiang +13 · 2 citations
   Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Bioinformatics and Genomic Networks #Computation (stat.CO) #Evolution and Paleontology Studies #FOS: Biological sciences #FOS: Computer and information sciences #Genomics and Phylogenetic Studies #Methodology (stat.ME) #Populations and Evolution (q-bio.PE)
9. Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation
   2024/12/08 by Mandev S. Gill, Guy Baele, Gill, Mandev S. +5 · 1 voice · 2 citations
   Biochemistry, Genetics and Molecular Biology · Computer Science · #Evolution and Genetic Dynamics #Genetic diversity and population structure #Bayesian Methods and Mixture Models
10. Principled, practical, flexible, fast: a new approach to phylogenetic factor analysis
    2021/07/02 by Gabriel W. Hassler, Hassler, Gabriel W., Brigida Gallone +15 · 1 citation
    Biochemistry, Genetics and Molecular Biology · Computer Science · #Applications (stat.AP) #Biomedical Text Mining and Ontologies #Data Mining Algorithms and Applications #FOS: Biological sciences #FOS: Computer and information sciences #Genomics and Phylogenetic Studies #Methodology (stat.ME) #Populations and Evolution (q-bio.PE)
11. Random-effects substitution models for phylogenetics via scalable gradient approximations
    2023/03/23 by Andrew F. Magee, Andrew J. Holbrook, Magee, Andrew F. +17 · 3 citations
    Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Computation (stat.CO) #Evolution and Paleontology Studies #FOS: Biological sciences #FOS: Computer and information sciences #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE)
12. Scalable Bayesian divergence time estimation with ratio transformations
    2021/10/25 by Xiang Ji, Ji, Xiang, Alexander A. Fisher +13 · 1 citation
    Biochemistry, Genetics and Molecular Biology · Medicine · #Computation (stat.CO) #Data-Driven Disease Surveillance #FOS: Biological sciences #FOS: Computer and information sciences #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE) #Yersinia bacterium, plague, ectoparasites research
13. Many-core algorithms for high-dimensional gradients on phylogenetic trees
    2023/03/08 by Karthik Gangavarapu, Gangavarapu, Karthik, Xiang Ji +11 · 1 citation
    Biochemistry, Genetics and Molecular Biology · #Computation (stat.CO) #FOS: Biological sciences #FOS: Computer and information sciences #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE) #RNA and protein synthesis mechanisms