Philippe Lemey
- Global circulation patterns of seasonal influenza viruses vary with antigenic drift
2015/06/08 by Trevor Bedford, Steven Riley, Ian G. Barr +25 · 14 citations
Medicine · #Influenza Virus Research Studies #Respiratory viral infections research #Viral Infections and Vectors
- BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics
2019/04/11 by Daniel L. Ayres, Daniel L Ayres, Michael P. Cummings +14 · 9 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Evolution and Genetic Dynamics #Genomics and Phylogenetic Studies
- Integrating regional sustainability program : indicators guide for Victoria
2010/01/01 by Simon Dellicour, Paul Bastide, Pauline Rocu +9 · 3 voices · 4 citations
Environmental Science · Social Sciences · #Sustainable Development and Environmental Policy #Environmental, Ecological, and Cultural Studies #Environmental and Social Impact Assessments
- BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference
2025/07/07 by Guy Baele, Xiang Ji, Gabriel W. Hassler +8 · 2 voices · 22 citations
Earth and Planetary Sciences · Biochemistry, Genetics and Molecular Biology · #Evolution and Paleontology Studies #Genomics and Phylogenetic Studies #Genetic diversity and population structure
- Epidemiological data of an influenza A/H5N1 outbreak in elephant seals in Argentina indicates mammal-to-mammal transmission
2024/11/11 by Marcela Uhart, Ralph Eric Thijl Vanstreels, Martha I. Nelson +7 · 1 voice · 12 citations
Environmental Science · Medicine · #Influenza Virus Research Studies #Marine animal studies overview #Viral gastroenteritis research and epidemiology
- APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016
2023/11/02 by Áine O’Toole, Richard A. Neher, Nnaemeka Ndodo +18 · 1 voice · 7 citations
Biochemistry, Genetics and Molecular Biology · Immunology and Microbiology · Medicine · #Bacillus and Francisella bacterial research #Herpesvirus Infections and Treatments #Poxvirus research and outbreaks
- Inferring Heterogeneous Evolutionary Processes Through Time: from\n sequence substitution to phylogeography
2013/09/12 by Filip Bielejec, Bielejec, Filip, Philippe Lemey +7 · 3 citations
Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Computation (stat.CO) #Evolution and Paleontology Studies #FOS: Biological sciences #FOS: Computer and information sciences #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE)
- Renaming of the genus Flavivirus to Orthoflavivirus and extension of binomial species names within the family Flaviviridae
2023/08/10 by Thomas S. Postler, Martin Beer, Bradley J. Blitvich +12 · 6 citations
- Integrating influenza antigenic dynamics with molecular evolution
2013/04/12 by Trevor Bedford, Bedford, Trevor, Marc A. Suchard +17 · 3 citations
Medicine · Environmental Science · #Influenza Virus Research Studies #Bacteriophages and microbial interactions #Virology and Viral Diseases
- COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses
2024/11/07 by Zhiyuan Chen, Joseph L.-H. Tsui, Bernardo Gutiérrez +10 · 1 voice · 5 citations
Medicine · Mathematics · #Influenza Virus Research Studies #COVID-19 epidemiological studies #Viral Infections and Outbreaks Research
- On the importance of assessing topological convergence in Bayesian phylogenetic inference
2024/02/18 by Marius Brusselmans, Luiz Max Carvalho, Brusselmans, Marius +17 · 2 voices · 2 citations
#q-bio.PE #q-bio.GN #q-bio.QM
- Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation
2024/12/08 by Mandev S. Gill, Guy Baele, Gill, Mandev S. +5 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Evolution and Genetic Dynamics #Genetic diversity and population structure #Bayesian Methods and Mixture Models
- Using phylogeographic approaches to analyse the dispersal history, velocity and direction of viral lineages — Application to rabies virus spread in Iran
2019/09/01 by Simon Dellicour, Cécile Troupin, Fatemeh Jahanbakhsh +7 · 1 citation
- The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
2025/05/07 by Jonathan E. Pekar, Spyros Lytras, Mahan Ghafari +16 · 3 voices · 2 citations
Medicine · Mathematics · #SARS-CoV-2 and COVID-19 Research #COVID-19 epidemiological studies #Viral Infections and Outbreaks Research
- Genomics reveals zoonotic and sustained human mpox spread in West Africa
2025/05/19 by Edyth Parker, Ifeanyi F. Omah, Délia Doreen Djuicy +59 · 1 voice · 3 citations
Biochemistry, Genetics and Molecular Biology · Immunology and Microbiology · Medicine · #Bacillus and Francisella bacterial research #Poxvirus research and outbreaks #Zoonotic diseases and public health
- Inferring phenotypic trait evolution on large trees with many incomplete\n measurements
2019/06/07 by Gabriel W. Hassler, Hassler, Gabriel, Max R. Tolkoff +9 · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · Earth and Planetary Sciences · #Bayesian Methods and Mixture Models #Computation (stat.CO) #Evolution and Paleontology Studies #FOS: Computer and information sciences #Genetic diversity and population structure #Methodology (stat.ME)
- Recent advances in the inference of deep viral evolutionary history
2025/08/22 by Jonathon C. O. Mifsud, Marc A. Suchard, Edward C. Holmes +1 · 1 voice · 1 citation
Biochemistry, Genetics and Molecular Biology · Environmental Science · Medicine · #Evolution and Genetic Dynamics #Bacteriophages and microbial interactions #Influenza Virus Research Studies
- Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived
2025/01/01 by Jonathan E. Pekar, Niema Moshiri, Philippe Lemey +8 · 2 voices · 2 citations
Medicine · Agricultural and Biological Sciences · #SARS-CoV-2 and COVID-19 Research #Animal Virus Infections Studies #Viral gastroenteritis research and epidemiology
- Comparative performance of viral landscape phylogeography approaches
2025/06/26 by Simon Dellicour, Fabiana Gámbaro, Maude Jacquot +6 · 1 voice · 1 citation
Environmental Science · Biochemistry, Genetics and Molecular Biology · #Wildlife Ecology and Conservation #Genetic diversity and population structure #Animal Ecology and Behavior Studies