Magee, Andrew F.
- 19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
2018/11/28 by Fourment, Mathieu, Magee, Andrew F., Whidden, Chris +3 · 4 citations
#Computation (stat.CO) #FOS: Biological sciences #FOS: Computer and information sciences #Populations and Evolution (q-bio.PE)
- Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies
2018/11/27 by Whidden, Chris, Claywell, Brian C., Fisher, Thayer +3 · 2 citations
#Data Structures and Algorithms (cs.DS) #FOS: Biological sciences #FOS: Computer and information sciences #Populations and Evolution (q-bio.PE)
- How trustworthy is your tree? Bayesian phylogenetic effective sample size through the lens of Monte Carlo error
2021/09/16 by Magee, Andrew F., Karcher, Michael D., Matsen, Frederick A. +1 · 1 citation
#FOS: Biological sciences #FOS: Computer and information sciences #Methodology (stat.ME) #Populations and Evolution (q-bio.PE)
- Random-effects substitution models for phylogenetics via scalable gradient approximations
2023/03/23 by Andrew F. Magee, Magee, Andrew F., Andrew J. Holbrook +17 · 3 citations
Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Computation (stat.CO) #Evolution and Paleontology Studies #FOS: Biological sciences #FOS: Computer and information sciences #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE)
- On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2
2023/06/28 by Gustavo Didier, Didier, Gustavo, Nathan Glatt-Holtz +7 · 1 citation
Biochemistry, Genetics and Molecular Biology · #Computation (stat.CO) #Evolution and Genetic Dynamics #FOS: Computer and information sciences #FOS: Mathematics #Gene Regulatory Network Analysis #Probability (math.PR) #Protein Structure and Dynamics