Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits

2023/10/02 by Yue Huang, Jiaxian He, Yuantao Xu +35 · 1 voice · 16 citations
Biochemistry, Genetics and Molecular Biology · #Genomics and Phylogenetic Studies #Plant Reproductive Biology #Plant biochemistry and biosynthesis

paper · doi:10.1038/s41588-023-01516-6

openalex publication_date 2023/10/02 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/31

Citations

• PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
• An end-to-end assembly of the Aedes aegypti genome
• Genomics of the origin and evolution of Citrus
• RepeatModeler2 for automated genomic discovery of transposable element families
• Pan-Genome of Wild and Cultivated Soybeans
• Multiple wheat genomes reveal global variation in modern breeding
• The barley pan-genome reveals the hidden legacy of mutation breeding

Cited by

• Citrus genomes: past, present and future
• Dynamic chromatin regulatory programs of sucrose and citric acid metabolism during fruit ripening in Citrus
• A new super-pangenome pipeline reveals domestication signatures of conserved noncoding sequences in the orange subfamily
• Super-pangenome analyses across 35 accessions of 23 Avena species highlight their complex evolutionary history and extensive genomic diversity
• Biogeography, evolution, and ecology of oranges and their relatives (Rutaceae: Aurantioideae)
• Molecular regulation of oil gland development and biosynthesis of essential oils in Citrus spp.
• Metabolome and comparative genome provide insights into secondary metabolites generation of a rare karst‐growing Rhododendron in vitro culture
• CsCPC, an R3‐MYB transcription factor, acts as a negative regulator of citric acid accumulation in Citrus
• CitPH4 Confers Resistance to Citrus Canker by Activating Papain‐Like Cysteine Protease
• Genomic variation drives plant flavor diversification
• Pangenome Analysis of Pyrus Reveals Potential Role of Transcription Factors in Recent Adaptation to Arid Environments
• From structural pangenomes to functional panomics in plants
• Studies on the mother flower carnation: past, present, and future
• CsCOI1 regulates plant growth and defense in citrus
• AP2 transcription factor CsAIL6 negatively regulates citric acid accumulation in citrus fruits by interacting with a WD40 protein CsAN11
• The genome of Citrus australasica reveals disease resistance and other species specific genes

Discussions

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