PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

2007/08/08 by Shaun Purcell, Benjamin Neale, Benjamin M. Neale +14 · 36,578 citations
Biochemistry, Genetics and Molecular Biology · Psychology · #Association (psychology) #Association mapping #Bioinformatics and Genomic Networks #Biology #Computational biology #Computer science #Demography #Evolutionary biology #Gene #Genetic Associations and Epidemiology #Genetic Mapping and Diversity in Plants and Animals #Genetic association #Genetics #Genome-wide association study #Genotype #Linkage (software) #Population #Psychology #Set (abstract data type) #Single-nucleotide polymorphism #Sociology

paper · pdf · doi:10.1086/519795

published in The American Journal of Human Genetics 81(3), 559-575 (Elsevier BV)

openalex publication_date 2007/08/08 · openalex created_date 2025/10/10 · openalex updated_date 2026/08/05

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• Sequence‐Based Multi Ancestry Association Study Reveals the Polygenic Architecture of Varroa destructor Resistance in the Honeybee Apis mellifera
• Disentangling the consequences of type 2 diabetes on targeted metabolite profiles using causal inference and interaction QTL analyses
• Lipids mediate supramolecular outer membrane protein assembly in bacteria
• Genetic basis of early onset and progression of type 2 diabetes in South Asians
• Releasing a sugar brake generates sweeter tomato without yield penalty
• Trends in genome diversity of small populations under a conservation program: a case study of two French chicken breeds
• Genomic differentiation and gene flow among Rattus species distributed in China and adjacent regions
• Evidence for dynastic succession among early Celtic elites in Central Europe
• Patterns of Genetic And Epigenetic Diversity Across A Range Expansion in The White-Footed Mouse (Peromyscus Leucopus)
• Standing genetic variation and de novo mutations underlie parallel evolution of island bird phenotypes
• The contribution of recent and historical demographic histories to genomic diversity and conservation status in plant species
• Effective Purging and Conservation of Heterozygous Regions During Independent Evolution to High‐Level Inbreeding in Wild Paradise Fishes
• Runs of homozygosity: current knowledge and applications in livestock
• Genetic basis of resistance to avian influenza in different commercial varieties of layer chickens
• Musical rhythm abilities and risk for developmental speech-language problems and disorders: epidemiological and polygenic associations
• Life on the edge: A new toolbox for population‐level climate change vulnerability assessments
• Comparative Genomics Provide Insight Into the Evolution of European Aphanomyces euteiches Strains
• Impact of population structure in the estimation of recent historical effective population size by the software GONE
• TGF-β Pathway–Based Polygenic Risk Score Modifies the Association between Red Meat Intake and Colorectal Cancer Risk: Application of a Novel Pathway-Based PRS Method
• Identification and Genome-Wide Association Analysis of Wheat FHB Resistance Genes
• A Population Genomics Approach to Understand the Diversity, Migration, and Reproduction of the Rice Pathogen Cercospora janseana
• Genomic insights into the admixture history and adaptive evolution of the Zhuang people
• Genomic Evidence for Elevational Segregation and Adaptive Introgression in Prunellidae Radiation
• Selection shapes the evolution of genome size in a globally invasive plant
• Genomic and neurobiological bases of variation in fighting strategies in gamecocks
• Cost-efficient assignment panel for ducks. Setup of a cost-efficient assignment panel for duck populations.
• Single-nucleus multi-omics identifies shared and distinct pathways in Pick’s and Alzheimer’s disease
• Boost or Bust? The Impact of Supplementation on Functional Genetic Diversity and Selective Processes in Tasmanian Devils
• Estimation of genome-wide coupling in rattlesnake hybrids provides insight into the process of speciation and its progress
• DNA methylation-estimated phenotypes, telomere length and risk of ischemic stroke: epigenetic age acceleration of screening and a Mendelian randomization study
• Origin and de novo domestication of sweet orange
• Molecular Phylogeographic Variation in the Siberian Weasel (Mustela sibirica) in Asia, Including Japan, Examined by ddRAD-Seq Analysis
• Unravelling the genetic landscape of Channa argus in Shandong Province: Insights into population differentiation, adaptation and conservation from whole‐genome resequencing
• Genomic Data Reveals Cryptic Diversity in the Soda Lake Cichlid Oreochromis amphimelas
• Florida scrub-jay genomes across space and time reveal impacts of population decline and reduced gene flow
• Predicting complex phenotypes using multi-omics data in maize
• FreezeNet: A Lightweight Model for Enhancing Freeze Tolerance Assessment and Genetic Analysis in Wheat
• SNP Data Quality Control in the Uruguayan Sheep Breeding Program Database
• Influence of Ploidy and Genetic Background on Stress Tolerance of Intraspecific Yeast Hybrids
• Construction of High‐Precision Genomic Assembled Sequences and Assessment of the Effect of Its Quality to Population Genetic Analysis of Endangered Okinawa Rail and Japanese Golden Eagle
• PanVariants: Best Practice for Pangenome-based Variant Calling Pipeline and Framework
• Genetic and Environmental Similarities Drive Repeated Genomic Evolution in Island Lizards
• Genetic and transcriptome analyses of the effect of genotype-by-environment interactions on Brassica napus seed oil content
• Genomic Assessment of Giraffes in North American Collections Highlights Conservation Challenges
• The Genomic Legacy of the Norman Conquest in Rural England
• Description of a species of the genus Paramesotriton (Caudata, Salamandridae) from Guizhou, China, based on morphological and genomic evidence
• Harmonizing genotype array data to understand genetic risk for brain amyloid burden in the AMYPAD PNHS Consortium
• Bovine SNP array-based genetic assessment of American plains bison at American Prairie
• Correcting for Genomic Inflation Leads to Loss of Power in Large‐Scale Genome‐Wide Association Study Meta‐Analysis
• Haplotype-resolved genome assembly and genome-wide association study identifies the candidate gene closely related to sugar content and tuber yield in Solanum tuberosum
• Dissecting genotype-environment relationships with functional implications for parental selection in Cannabis breeding
• Genetic history of Scythia
• A reproducible ddRAD-seq protocol reveals novel genomic association signatures for fruit-related traits in peach
• Variation in phenotype, genotype, and somatic diversity among asexual Schmidtea mediterranea planarians
• Runs of homozygosity assessment using reduced representation sequencing highlight the evidence of random mating in emu (Dromaius novaehollandiae)
• Identifying candidate genetic variants for egg number by analyzing over 1,000 fully sequenced layers
• PlantVarFilter: A Comprehensive Pipeline for Variant Filtering and Genome-Wide Association Analysis in Plant Genomics
• High-resolution genome assembly and population genetic study of the endangered maple Acer pentaphyllum (Sapindaceae): implications for conservation strategies
• Association between methylation quantitative trait loci and colorectal cancer risk, survival and cancer recurrence
• Genome Structural Variants Shape Adaptive Success of an Invasive Urban Malaria Vector Anopheles stephensi
• The genetic structure and diversity of smallholder dairy cattle in Rwanda
• Population Genomics Provides Insights Into Genomic Features of Inbreeding Depression in Arma Chinensis
• Moderation of treatment outcomes by polygenic risk for alcohol‐related traits in placebo‐controlled trials of topiramate
• Evolution and genetic adaptation of fishes to the deep sea
• Integration of ssGWAS and ROH analyses for uncovering genetic variants associated with reproduction traits in Large White pigs
• A chromosome-level genome assembly of the Chinese herring ( Ilisha elongata ) uncovered its population dynamics and genes related to lipid metabolism
• Genomics Reveals the Origins of Historical Specimens
• The genome-wide structure of the Jewish people
• DNA-guided transcription factor cooperativity shapes face and limb mesenchyme
• Genomic Introgression and Adaptation of Southern Seabird Species Facilitate Recent Polar Colonization
• Multiple Origins or Widespread Gene Flow in Agricultural Fields? Regional Population Genomics of Herbicide Resistance in Bromus tectorum
• eDNA metabarcoding and whole genome sequencing detect European-American Eel hybrids in northeastern Canada
• Population genomics of Vitis pseudoreticulata reveals the genetic basis of fungal resistance in grapevine
• DeepKin: Predicting relatedness from low-coverage genomes and paleogenomes with convolutional neural networks
• Heritability and genomic basis of age-at-maturity in Chinook Salmon
• A novel genome-wide association study method for detecting quantitative trait loci interacting with complex population structures in plant genetics
• The role of mating systems in postzygotic reproductive isolation between two recently divergent Aquilegia Species
• Moroccan genome project: genomic insight into a North African population
• Pandora: A Tool to Estimate Dimensionality Reduction Stability of Genotype Data
• Genome-Wide Association Study Identifies Variants Associated With Progression of Liver Fibrosis From HCV Infection
• Insights into the genomic and phenotypic diversity of Monosporozyma unispora strains isolated from anthropic environments
• Integrative genomics sheds light on the immunogenetics of tuberculosis in cattle
• Kidney multiome-based genetic scorecard reveals convergent coding and regulatory variants
• Widespread, long‐term admixture between grey wolves and domestic dogs across Eurasia and its implications for the conservation status of hybrids
• Leaf Spectroscopy Reveals Drought Response Variation in Fagus sylvatica Saplings From Across the Species' Range
• Comparative population genomics of manta rays has global implications for management
• High-quality phenotypic and genotypic dataset of barley genebank core collection to unlock untapped genetic diversity
• Enhancing inbreeding estimation and global conservation insights through chromosome-level assemblies of the Chinese and Malayan pangolin
• Comparison of kinship‐identification methods for robust stock assessment using close‐kin mark–recapture data for Pacific bluefin tuna
• Evaluating genome-wide and targeted forensic sequencing approaches to kinship determination
• Grapevine pangenome facilitates trait genetics and genomic breeding
• Rare, long‐distance dispersal underpins genetic connectivity in the pink sea fan, Eunicella verrucosa
• The Missing Link of Jewish European Ancestry: Contrasting the Rhineland and the Khazarian Hypotheses
• Unidirectional trans‐Atlantic gene flow and a mixed spawning area shape the genetic connectivity of Atlantic bluefin tuna
• Tutorial: a statistical genetics guide to identifying HLA alleles driving complex disease
• Mapping associations of polygenic scores with autistic and ADHD traits in a single city region
• The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome
• Genomic survey of the ex situ Palm Cockatoo (Probosciger aterrimus) population identifies an undiscovered species-level lineage endemic to Yapen Island
• Association of Multiple-trait Polygenic Risk Score with Obesity and Cardiometabolic Diseases in Korean Population
• Intraspecific neighbourhood effects on male and female fitness in Moricandia moricandioides
• Diversity and Structure of Diaporthe humulicola Populations from Eastern North America
• Fine-scale structure of a whole regional population through genetics and genealogies
• Uncovering genetic relationships and designing markers for genotyping European pear varieties
• Combining nuclear genome, chloroplast fragments and morphology to solve the species delimitation of Aquilegia incurvata (Ranunculaceae)
• Genome-Wide Association Studies of Stripe Rust Resistance in Spring Wheat Landraces from Northwest China
• Haplotype-resolved assemblies provide insights into genomic makeup of the oldest grapevine cultivar (Munage) in China
• The Late Quaternary climate impact on the genome of the woodland strawberry (Fragaria vesca), a perennial herb
• Exploring the genetic diversity of Mediterranean fig trees highlights genes associated with fruit traits
• Exon Capture Museomics Deciphers the Nine-Banded Armadillo Species Complex and Identifies a New Species Endemic to the Guiana Shield
• BTS: a scalable Bayesian Tissue Score for prioritizing GWAS variants and their functional contexts across >1,000s of omics datasets
• Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands
• Genome-wide association study identifies susceptibility loci for IgA nephropathy
• Resequencing of 414 cultivated and wild watermelon accessions identifies selection for fruit quality traits
• Mendelian Randomization Methods for Causal Inference: Estimands, Identification and Inference
• Integrative Genotyping and Analysis of Canine Structural Variation Using Long-read and Short-read Data
• Современные отечественные программные комплексы интерпретации гравимагнитных данных
• Genome-wide association studies
• Methodologies underpinning polygenic risk scores estimation: a comprehensive overview
• Statistical inference in two-sample summary-data Mendelian randomization using robust adjusted profile score
• Genetic susceptibility to feline infectious peritonitis in Birman cats
• Association between Common Variation in Genes Encoding Sweet Taste Signaling Components and Human Sucrose Perception
• The deep population history of northern East Asia from the Late Pleistocene to the Holocene
• Genetic diversity of US Rambouillet in the National Sheep Improvement Program compared to other sheep breeds
• Genome‐wide association studies reveal genetic diversity and regulatory loci underlying dwarfing traits in banana
• Comprehensive whole-genome analyses of the UK Biobank reveal significant sex differences in both genotype missingness and allele frequency on the X chromosome
• Pan-UK Biobank genome-wide association analyses enhance discovery and resolution of ancestry-enriched effects
• Association of common genetic variants with human skin color variation in Indian populations
• Evaluating the nonlinear effects of sleep duration on biological aging across phenotypic, genomic, and epigenomic data
• Characterisation of the Historic Demographic Decline of the British European Polecat Population
• Integration of GWAS and transcriptome approaches for the identification of nitrogen-, phosphorus-, and potassium-responsive genes in tomato
• Population structure of three New Zealand crested penguins identifies current conservation challenges for the Fiordland penguin/tawaki, erect-crested penguin, and eastern rockhopper penguin
• SAGA (Simplified Association Genome-wide Analyses): a user-friendly Pipeline to Democratize Genome-Wide Association Studies
• Tracing the Genetic Heritage of the Kirgiz People: Dual-Wave Admixture and Ancestry-Biased Adaptation
• Stress-induced altered expression of hippocampal nuclear and mitochondrial encoded genes in rats and cross-species genetic associations reveal molecular links to depression
• Ancient DNA from Chalcolithic Israel reveals the role of population mixture in cultural transformation
• Genomic regions affecting perinatal and early life survival in dairy calves
• Genomic analyses reveal the stepwise domestication and genetic mechanism of curd biogenesis in cauliflower
• Phenome-wide analysis of copy number variants in 470,727 UK Biobank genomes
• Phenotypic diversity and population structure of Pecan (Carya illinoinensis) collections reveals geographic patterns
• Beyond Single Variants: A Pathway-Based Approach to Explore the Genetic Basis of Memory
• Cancer classification and pathway discovery using non-negative matrix factorization
• A semi-automatic method to guide the choice of ridge parameter in ridge regression
• Genomics of Neotropical biodiversity indicators: Two butterfly radiations with rampant chromosomal rearrangements and hybridization
• Spatial population genomics of the brown rat (Rattus norvegicus) in New York City
• A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci
• Reducing pervasive false positive identical-by-descent segments detected by large-scale pedigree analysis
• Tutorial: a guide to performing polygenic risk score analyses
• Application of compressed sensing to genome wide association studies and genomic selection
• Decoding hybrid origins and genetic architecture of leaf traits variation in camellia via high-density 21K SNP array for genomic prediction
• Genetic diversity structure of western-type carrots
• Genome-wide association analysis and validation with KASP markers for nut and shell traits in almond (Prunus dulcis [Mill.] D.A.Webb)
• Aligning gene trees with family trees
• Rapid adaptation follows experimental assisted gene flow in subset of annual monkeyflower populations
• Evolutionary Genomics of Structural Variation in Asian Rice ( Oryza sativa ) Domestication
• Population‐level gene expression can repeatedly link genes to functions in maize
• Genomic and genetic insights into Mendel’s pea genes
• Genotype-Phenotype Discrepancies in Family Members With a Novel Glucokinase Mutation: Insights Into GCK-MODY and Its Interplay With Insulin Resistance
• Genetic Variations in Bitter Taste Receptors and COVID-19 in the Canadian Longitudinal Study on Aging
• A wild genome of the underutilized legume lablab ( Lablab purpureus ) reveals the genetic basis of domestication
• Large-scale audiometric phenotyping identifies distinct genes and pathways involved in hearing loss subtypes
• Investigating the Genetic Basis of the Influence of Adiposity on Psoriasis: A Cross-Sectional Study in a Large United Kingdom Population–Based Biobank
• Scaling up orphan crop research: A global genetic perspective of cowpea ( Vigna unguiculata ) diversity from 10,617 accessions
• Multiomics Integration of Epigenetics, Proteomics, and Metabolomics Identifies Putative Drug Targets and Improves Early Prediction for Diabetes
• Molecular and genetic insights into human ovarian aging from single-nuclei multi-omics analyses
• Inferring domestic goat demographic history through ancient genome imputation
• Genomic ancestry predicts rapid responses to drought across spatiotemporal scales
• Population genomics of Plasmodium malariae from 4 African countries
• Evolution of Crematogaster sordidula (Hymenoptera, Formicidae) Ants in the Mediterranean Region During Plio‐Pleistocene Climatic Changes
• Integrative multi-omics analysis reveals the genetic architecture of floral traits in Anthurium
• Hybridization drives high genetic diversity in the Japanese fire-bellied newt, Cynops pyrrhogaster
• Ancient and Recent Riverine Gene Flow Contributed to the Adaptive Radiation of Sailfin Silversides in Wallace's Dreampond
• Mutation Load in Sunflower Inversions Is Negatively Correlated with Inversion Heterozygosity
• Elucidating the Genetic Relationships on the Original Old Sicilian Triticum Spp. Collection by SNP Genotyping
• Sweet Potato Gene Clusters Control Anthocyanin Biosynthesis and Leaf Morphology
• Investigating the relationship between breast cancer risk factors and an AI-generated mammographic texture feature in the Nurses’ Health Study II
• Selection scans and downstream analysis with selscan
• A Human Glomerular Disease Atlas defines the APOL1-JAK-STAT feed forward loop in focal segmental glomerulosclerosis
• Whole genome sequencing reveals variation in immune and nervous systems associated with harbor seal susceptibility to phocine distemper virus
• A cross-population atlas of genetic associations for 220 human phenotypes
• Chromosome-level reference genome of Vitis piasezkii var. pagnucii provides insights into a new locus of resistance to grapevine powdery mildew
• De novo genome assembly, inversion detection, and worldwide adaptation on the invasive species Styela plicata
• Phylogeny and Climate Change–Driven Distribution Dynamics of Keteleeria
• Molecular epidemiology of Ascaris lumbricoides following multiple rounds of community-wide treatment
• Long‐term cardiovascular risk in women with hypertensive disorders of pregnancy: Insights from polygenic risk scores
• Genomic insights into the domestication and genetic basis of yield in papaya
• Large-scale identification and association analysis of wheat grain weight genes using rice orthologs
• A pilot multi-omics study reveals genetic mechanisms regulating milk component traits in dairy cattle
• Leveraging genome-wide association analyses with chip and imputed data emerges potential pleiotropic region for four duck growth traits
• Divergence and Selection in a Cryptic Species Complex ( Geonoma undata : Arecaceae) in the Northern Andes of Colombia
• DeepPGDB: A Novel Paradigm for AI-Guided Interactive Plant Genomic Database
• Genome assembly of pomegranate highlights structural variations driving population differentiation and key loci underpinning cold adaption
• Developing future resilience from signatures of adaptation across the sorghum pangenome
• Graph pangenome reveals structural variation dynamics during cucumber breeding
• Novel Methods to Optimize Genotypic Imputation for Low‐Coverage, Next‐Generation Sequence Data in Crop Plants
• Microsampling with dried blood spots and mass spectrometry enables PK/PD profiling of responses to praziquantel in a Schistosoma haematobium–exposed Zimbabwean population
• Chromosome-level genome assembly of Pinus massoniana provides insights into conifer adaptive evolution
• Interpretable multimodal fusion networks reveal mechanisms of brain cognition
• The evolutionary patterns of barley pericentromeric chromosome regions, as shaped by linkage disequilibrium and domestication
• Copy number variation analysis identifies novel CAKUT candidate genes in children with a solitary functioning kidney
• Correction for Weak IV Bias and Winner's Curse in Mendelian Randomization Egger Regression: Rerandomized Egger estimator
• FDR controlling procedures with dimension reduction and their application to GWAS with linkage disequilibrium score
• 研教一课 受益多课——师徒同教“八年级数学（下）实践与探索”
• Integrating ethnolinguistic and archaeobotanical data to uncover the origin and dispersal of cultivated sorghum in Africa: a genomic perspective
• Massive migration from the steppe is a source for Indo-European languages in Europe
• Genome-wide donor–recipient non-HLA mismatch and graft loss
• Sex-Biased Admixture Followed by Isolation and Adaptive Evolution Shaped the Genomic and Blood Pressure Diversity of the LopNur People
• Genetic and training adaptations in the Haenyeo divers of Jeju, Korea
• Genomic data from the extinct California brown bear suggests a source population for reintroduction to California
• Controlling the false discovery rate under a non-parametric graphical dependence model
• Gene and Gene-Set Analysis for Genome-Wide Association Studies
• Efficient Algorithm for Extremely Large Multi-task Regression with Massive Structured Sparsity
• Pharmacokinetic and pharmacogenetic associations with dolutegravir neuropsychiatric adverse events in an African population
• Multiple paternally inherited chloroplast capture events associated with Taxus speciation in the Hengduan Mountains
• A Review of Statistical Methods in Imaging Genetics
• Phylogenomics and evolutionary history of Oreobates (Anura: Craugastoridae) Neotropical frogs along elevational gradients
• Moderate introgression in a single individual genome is sufficient to mislead phylogenomic inference of Triplophysa
• Domestication history and genetic changes for the newly evolved flower color in the ornamental plant Lobularia maritima (Brassicaceae)
• Dissecting the genetic basis of drought escape across multiple traits in colonizing Arabidopsis thaliana lineages
• Geographical distribution, genetic diversity, and environmental adaptations of dromedary camel breeds in Saudi Arabia
• Population and adaptation history of 739 Thlaspi arvense natural accessions
• An alignment- and reference-free strategy using k -mer present pattern for population genomic analyses
• Haplotype-resolved and chromosome-level reference genome assembly of Diospyros deyangensis provides insights into the evolution and juvenile growth of persimmon
• Phased T2T genome assemblies facilitate the mining of disease-resistance genes in Vitis davidii
• Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm
• Genomic evidence for hybridization and introgression between blue peafowl and endangered green peafowl and molecular foundation of leucistic plumage of blue peafowl
• Genome-wide scan of 29,141 African Americans finds no evidence of selection since admixture
• Wavelet Screaming: a novel approach to analyzing GWAS data
• Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids
• GAPIT Version 3: Boosting Power and Accuracy for Genomic Association and Prediction
• Phylogenomic and morphological evidence supports the reinstatement of the bamboo genus Clavinodum from Oligostachyum (Poaceae: Bambusoideae)
• Ancient DNA from Shimao city records kinship practices in Neolithic China
• Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets
• Beyond Genetic Indicators: How Reproductive Mode and Hybridisation Challenge Freshwater Mussel Conservation
• Integrative taxonomy recognises four species within the legume Inga chocoensis (Leguminosae: Caesalpinioideae)
• Environmental drivers behind the genetic differentiation in mountain chickadees ( Poecile gambeli )
• StarBASE-GP: Biologically-Guided Automated Machine Learning for Genotype-to-Phenotype Association Analysis
• Environmental technology verification: Add-on NOsub x controls
• Large-Scale Gene-Centric Meta-analysis across 32 Studies Identifies Multiple Lipid Loci
• Whole exome and genome sequencing in mendelian disorders: a diagnostic and health economic analysis
• Genomic selection and genetic architecture of agronomic traits during modern flowering Chinese cabbage breeding
• The whole-genome dissection of root system architecture provides new insights for the genetic improvement of alfalfa (Medicago sativa L.)
• Ancient viral genomes reveal introduction of human pathogenic viruses into Mexico during the transatlantic slave trade
• Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits
• Chromosome-level genome assembly of the king horseshoe bat (Rhinolophus rex) provides insights into its conservation status and chromosomal evolution of Rhinolophus
• Genome-wide association analysis provides insights into the molecular etiology of dilated cardiomyopathy
• 100 ancient genomes show repeated population turnovers in Neolithic Denmark
• De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus
• Polymorphisms in ABLIM1 are Associated with Personality Traits and Alcohol Dependence
• Integrative Genomics Reveals the Genetics and Evolution of the Honey Bee’s Social Immune System
• GeneZip: A software package for storage-efficient processing of genotype data
• Genetic Discovery and Risk Prediction for Type 1 Diabetes in Individuals Without High-Risk HLA-DR3/DR4 Haplotypes
• Sparse matrix factorization robust to sample sharing across GWAS reveals interpretable genetic components
• Detectability of runs of homozygosity is influenced by analysis parameters and population-specific demographic history
• La investigación dialectológica en Hispanoamérica y el proceso de independización de las variantes de español americano
• Genomic Relationships, Novel Loci, and Pleiotropic Mechanisms across Eight Psychiatric Disorders
• Genome-wide association study of alcohol consumption and genetic overlap with other health-related traits in UK Biobank (N=112 117)
• ParthenoGenius: A user-friendly heuristic for inferring presence and mechanism of facultative parthenogenesis from genetic and genomic datasets
• Genetic reassessment of population subdivision in Yellowstone National Park bison
• Genomic diversity and demographic history of the endangered Sichuan hill-partridge (Arborophila rufipectus)
• Parallel recolonizations generate distinct genomic sectors in kelp following high‐magnitude earthquake disturbance
• Integrating kelp genomic analyses and geological data to reveal ancient earthquake impacts
• Prevención de los accidentes de trabajo mortales basada en la evidencia: una aproximación sistemática
• Does the seed fall far from the tree? Weak fine-scale genetic structure in a continuous Scots pine population
• Diversity and dissemination of viruses in pathogenic protozoa
• Applying genomic approaches to identify historic population declines in European forest bats
• Cardiovascular Risk Factors and MRI Markers of Cerebral Small Vessel Disease
• An individual with Sarmatian-related ancestry in Roman Britain
• Genomic analysis reveals a cryptic pangolin species
• Genome-wide association study reveals BET1L associated with survival time in the 137,693 Japanese individuals
• Fifteen Years of Gene Set Analysis for High-Throughput Genomic Data: A Review of Statistical Approaches and Future Challenges
• Genetic Analysis of Lung Cancer and the Germline Impact on Somatic Mutation Burden
• Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes
• Diverse genetic origins of medieval steppe nomad conquerors -- a response to Mikheyev et al. (2019)
• Efficient Computation of Positional Population Counts Using SIMD Instructions
• Genome-wide analysis of single nucleotide polymorphisms and copy number variants in fibromyalgia suggest a role for the central nervous system
• The relationship between extreme inter-individual variation in macrophage gene expression and genetic susceptibility to inflammatory bowel disease
• Type 2 diabetes susceptibility gene variants predispose to adult-onset autoimmune diabetes
• A Genome-Wide Search for Greek and Jewish Admixture in the Kashmiri Population
• Complex histories of repeated gene flow in Cameroon crater lake cichlids cast doubt on one of the clearest examples of sympatric speciation
• Genetic structure and domestication history of the grape
• Early human dispersals within the Americas
• Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa
• Inland-coastal bifurcation of southern East Asians revealed by Hmong-Mien genomic history
• Genomic Insight Into the Population Admixture History of Tungusic-Speaking Manchu People in Northeast China
• Retrieving Y chromosomal haplogroup trees using GWAS data
• Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation
• Genetic Heterogeneity in Algerian Human Populations
• Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry
• Genome flux and stasis in a five millennium transect of European prehistory
• Human population dynamics and Yersinia pestis in ancient northeast Asia
• Improved phylogenetic resolution for Y-chromosome Haplogroup O2a1c-002611
• Genetic modifiers of Mendelian disease: Huntington’s disease and the trinucleotide repeat disorders
• Afghan Hindu Kush: Where Eurasian Sub-Continent Gene Flows Converge
• Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs
• Population structure of Han Chinese in the modern Taiwanese population based on 10,000 participants in the Taiwan Biobank project
• European Roma groups show complex West Eurasian admixture footprints and a common South Asian genetic origin
• Revealing the Genetic Impact of the Ottoman Occupation on Ethnic Groups of East-Central Europe and on the Roma Population of the Area
• Genes reveal traces of common recent demographic history for most of the Uralic-speaking populations
• Genome-wide evidence of Austronesian–Bantu admixture and cultural reversion in a hunter-gatherer group of Madagascar
• Genome diversity in the Neolithic Globular Amphorae culture and the spread of Indo-European languages
• Genetic Stratigraphy of Key Demographic Events in Arabia
• Universidad de Sigüenza
• The evolutionary history of dogs in the Americas
• Arctic-adapted dogs emerged at the Pleistocene–Holocene transition
• Na-Dene populations descend from the Paleo-Eskimo migration into America
• A splice variant in KRT71 is associated with curly coat phenotype of Selkirk Rex cats
• Genetic structure in village dogs reveals a Central Asian domestication origin
• Global Phylogeographic and Admixture Patterns in Grey Wolves and Genetic Legacy of An Ancient Siberian Lineage
• Evolutionary and functional impact of common polymorphic inversions in the human genome
• Natural Selection and Origin of a Melanistic Allele in North American Gray Wolves
• Large-scale GWAS reveals insights into the genetic architecture of same-sex sexual behavior
• Siberian genetic diversity reveals complex origins of the Samoyedic‐speaking populations
• LGI2 Truncation Causes a Remitting Focal Epilepsy in Dogs
• Ancient Genomes Reveal Yamnaya-Related Ancestry and a Potential Source of Indo-European Speakers in Iron Age Tianshan
• A harmonized benchmarking framework for implementation-aware evaluation of 46 polygenic risk score tools across binary and continuous phenotypes
• BONuS: Multiple multivariate testing with a data-adaptivetest statistic
• G2DR: A Genotype-First Framework for Genetics-Informed Target Prioritization and Drug Repurposing
• Genomic variability of Cirneco dell’Etna and the genetic distance with other dog breeds
• Studies of modern Italian dog populations reveal multiple patterns for domestic breed evolution
• The genetic prehistory of the Greater Caucasus
• Early medieval genetic data from Ural region evaluated in the light of archaeological evidence of ancient Hungarians
• A Genome-Wide Analysis of Populations from European Russia Reveals a New Pole of Genetic Diversity in Northern Europe
• The Caucasus as an Asymmetric Semipermeable Barrier to Ancient Human Migrations
• Genome diversity in Ukraine
• Genomic comparisons reveal biogeographic and anthropogenic impacts in the koala (Phascolarctos cinereus): a dietary-specialist species distributed across heterogeneous environments
• Genetic position of Hungarian Grey among European cattle and identification of breed-specific markers
• Genetic mapping of the sex-linked barring gene in the chicken
• Whole-genome resequencing reveals signatures of selection and timing of duck domestication
• Sonates. Violoncelle, piano. La majeur. Op. 69
• Pre-B-cell leukemia homeobox 1 (PBX1) shows functional and possible genetic association with bone mineral density variation
• Whole-genome re-sequencing data to infer historical demography and speciation processes in land snails: the study of two Candidula sister species
• The genomic history and global expansion of domestic donkeys
• Detecting Genetic Ancestry and Adaptation in the Taiwanese Han People
• Inversions shape the divergence of Drosophila pseudoobscura and Drosophila persimilis on multiple timescales
• The Anglo-Saxon migration and the formation of the early English gene pool
• Reconstructing the history of founder events using genome-wide patterns of allele sharing across individuals
• Genome-Wide and Paternal Diversity Reveal a Recent Origin of Human Populations in North Africa
• The human brain's network architecture is genetically encoded by modular pleiotropy
• Benchmarking end-to-end genotype-to-phenotype prediction workflows across 80 openSNP phenotypes
• Variants of the Adenosine A_2A Receptor Gene Are Protective against Proliferative Diabetic Retinopathy in Patients with Type 1 Diabetes
• The origins and spread of domestic horses from the Western Eurasian steppes
• Population Genetic Structure in Indian Austroasiatic Speakers: The Role of Landscape Barriers and Sex-Specific Admixture
• Genomic Ancestry of North Africans Supports Back-to-Africa Migrations
• Genomic Analyses Reveal the Influence of Geographic Origin, Migration, and Hybridization on Modern Dog Breed Development
• Late Pleistocene human genome suggests a local origin for the first farmers of central Anatolia
• Genomic insights into Neolithic farming‐related migrations in the junction of east and southeast Asia
• Exome Sequencing Followed by Large-Scale Genotyping Fails to Identify Single Rare Variants of Large Effect in Idiopathic Generalized Epilepsy
• Whole-Genome Sequencing of a 900-Year-Old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan
• Genetic Structure of Europeans: A View from the North–East
• Domestication of cattle: Two or three events?
• Swedish Population Substructure Revealed by Genome-Wide Single Nucleotide Polymorphism Data
• The Genome-wide Patterns of Variation Expose Significant Substructure in a Founder Population
• Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations
• Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline
• Rethinking dog domestication by integrating genetics, archeology, and biogeography
• Ancient human genomes suggest three ancestral populations for present-day Europeans
• Patterns of genetic differentiation and the footprints of historical migrations in the Iberian Peninsula
• Worldwide patterns of genomic variation and admixture in gray wolves
• Population genomics of wild and laboratory zebrafish (Danio rerio)
• The Beaker Phenomenon and the Genomic Transformation of Northwest Europe
• Genomic Insights into the Ancestry and Demographic History of South America
• Variants in a Novel Epidermal Collagen Gene (COL29A1) Are Associated with Atopic Dermatitis
• Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet
• Genetic landscape of populations along the Silk Road: admixture and migration patterns
• A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids
• International Career Development Trends. Trends and Issues Alert.
• Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves
• The Genetic Echo of the Tarim Mummies in Modern Central Asians
• Genes mirror geography within Europe
• The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
• Genetic substructure and admixture of Mongolians and Kazakhs inferred from genome-wide array genotyping
• Gene-centric Association Signals for Lipids and Apolipoproteins Identified via the HumanCVD BeadChip
• Chimpanzee genomic diversity reveals ancient admixture with bonobos
• Problematic alcohol use associates with sodium channel and clathrin linker 1 (SCLT1) in trauma‐exposed populations
• Genome-Wide Association Study in Dachshund: Identification of a Major Locus Affecting Intervertebral Disc Calcification
• The genetic prehistory of the New World Arctic
• Paleo-Eskimo genetic legacy across North America
• Mapping Post-Glacial expansions: The Peopling of Southwest Asia
• Ancient DNA from Guam and the Peopling of the Pacific
• The Beaker phenomenon and the genomic transformation of northwest Europe
• Characterization of the biological processes shaping the genetic structure of the Italian population
• The Geography of Recent Genetic Ancestry across Europe
• Measuring and Estimating the Effect Sizes of Copy Number Variants on General Intelligence in Community-Based Samples
• Genome-wide association studies establish that human intelligence is highly heritable and polygenic
• Childhood intelligence is heritable, highly polygenic and associated with FNBP1L
• Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance
• The Genetic Ancestry of Modern Indus Valley Populations from Northwest India
• NEW INSIGHTS INTO THE PHYLOGENY AND SPECIATION OF KUMQUAT (FORTUNELLA SPP.) BASED ON CHLOROPLAST SNP, NUCLEAR SSR AND WHOLE-GENOME SEQUENCING
• Le processus de victimité secondaire chez l’enfant victime d’agression à caractère sexuel : double approche, victimologie clinique, psychologie judiciaire : appréhension par le discours de professionnels du parcours socio-judiciaire
• No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews
• Diverse genetic origins of medieval steppe nomad conquerors
• Inferring the population history of Tai-Kadai-speaking people and southernmost Han Chinese on Hainan Island by genome-wide array genotyping
• Genomic landscape of human diversity across Madagascar
• Ancient and recent admixture layers in Sicily and Southern Italy trace multiple migration routes along the Mediterranean
• Ancient genomes reveal structural shifts after the arrival of Steppe-related ancestry in the Italian Peninsula
• Standing at the Gateway to Europe - The Genetic Structure of Western Balkan Populations Based on Autosomal and Haploid Markers
• Hundreds of variants clustered in genomic loci and biological pathways affect human height
• Evolution of Darwin’s finches and their beaks revealed by genome sequencing
• Morphometric, Behavioral, and Genomic Evidence for a New Orangutan Species
• Five Years of GWAS Discovery
• Multiple migrations to the Philippines during the last 50,000 years
• Resolving the ancestry of Austronesian-speaking populations
• An ARHGEF10 Deletion Is Highly Associated with a Juvenile-Onset Inherited Polyneuropathy in Leonberger and Saint Bernard Dogs
• Ancient DNA sheds light on the genetic origins of early Iron Age Philistines
• Upper Palaeolithic genomes reveal deep roots of modern Eurasians
• Massive migration from the steppe is a source for Indo-European languages in Europe
• Genetic origins of the Minoans and Mycenaeans
• The genetic structure of the world’s first farmers
• The Human Transcription Factors
• A southern African origin and cryptic structure in the highly mobile plains zebra
• Complex population structure in African village dogs and its implications for inferring dog domestication history
• Rediscovery of Red Wolf Ghost Alleles in a Canid Population Along the American Gulf Coast
• Ancient DNA from Guam and the peopling of the Pacific
• Reconstructing genetic history of Siberian and Northeastern European populations
• EFGPP: Exploratory framework for genotype-phenotype prediction
• Spatial variation in the parasite communities and genomic structure of urban rats in New York City
• Adaptive sequence divergence forged new neurodevelopmental enhancers in humans
• Population interconnectivity over the past 120,000 years explains distribution and diversity of Central African hunter-gatherers
• Genomic insights into the origin of farming in the ancient Near East
• The genomic history of the Aegean palatial civilizations
• A Late Pleistocene human genome from Southwest China
• Autism spectrum disorders and autistic traits share genetics and biology
• Analysis of Genetic Diversity in the American Standardbred Horse Utilizing Short Tandem Repeats and Single Nucleotide Polymorphisms
• The DMRT3 ‘Gait keeper’ mutation affects performance of Nordic and Standardbred trotters1
• Identification and validation of risk loci for osteochondrosis in standardbreds
• The Genetic Ancestry of African Americans, Latinos, and European Americans across the United States
• Environmental genomics of Late Pleistocene black bears and giant short-faced bears
• The Role of Geography in Human Adaptation
• Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers
• Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation
• Heterogeneity in Genetic Admixture across Different Regions of Argentina
• Philippine Ayta possess the highest level of Denisovan ancestry in the world
• Discerning the Origins of the Negritos, First Sundaland People: Deep Divergence and Archaic Admixture
• Genetic Analysis Reveals a Longevity-Associated Protein Modulating Endothelial Function and Angiogenesis
• Common SNPs explain a large proportion of the heritability for human height
• Human knockouts and phenotypic analysis in a cohort with a high rate of consanguinity
• Sparse whole-genome sequencing identifies two loci for major depressive disorder
• Research Review: Polygenic methods and their application to psychiatric traits
• CAG Repeat Not Polyglutamine Length Determines Timing of Huntington’s Disease Onset
• Reconstructing Druze population history
• Genome-Wide Diversity in the Levant Reveals Recent Structuring by Culture
• Ethiopian Genetic Diversity Reveals Linguistic Stratification and Complex Influences on the Ethiopian Gene Pool
• Genetic origins, singularity, and heterogeneity of Basques
• Genomic analyses reveal three independent introductions of the invasive brown rat (Rattus norvegicus) to the Faroe Islands
• Early Back-to-Africa Migration into the Horn of Africa
• Functional colour genes and signals of selection in colour‐polymorphic salamanders
• Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
• Ancient Genomics Reveals Four Prehistoric Migration Waves into Southeast Asia
• The prehistoric peopling of Southeast Asia
• Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array
• Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations
• Parallel Molecular Evolution in Pathways, Genes, and Sites in High-Elevation Hummingbirds Revealed by Comparative Transcriptomics
• Shifts in the Genetic Landscape of the Western Eurasian Steppe Associated with the Beginning and End of the Scythian Dominance
• Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads
• The genome of an ancient Rouran individual reveals an important paternal lineage in the Donghu population
• Genetic Structure of the Han Chinese Population Revealed by Genome-wide SNP Variation
• Genomic Analyses of Pre-European Conquest Human Remains from the Canary Islands Reveal Close Affinity to Modern North Africans
• Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays
• The time and place of European admixture in Ashkenazi Jewish history
• Signatures of founder effects, admixture, and selection in the Ashkenazi Jewish population
• Extensive Ethnolinguistic Diversity in Vietnam Reflects Multiple Sources of Genetic Diversity
• A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan
• Genome-Wide SNP Analysis Reveals Population Structure and Demographic History of the Ryukyu Islanders in the Southern Part of the Japanese Archipelago
• The history of human populations in the Japanese Archipelago inferred from genome-wide SNP data with a special reference to the Ainu and the Ryukyuan populations
• Corded Ware cultural complexity uncovered using genomic and isotopic analysis from south-eastern Poland
• Decoding a highly mixed Kazakh genome
• Common polygenic variation contributes to risk of schizophrenia and bipolar disorder
• Evidence for gene-environment interaction in a genome wide study of nonsyndromic cleft palate
• The genetics of monarch butterfly migration and warning colouration
• Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia
• Genome-wide meta-analysis of cognitive empathy: heritability, and correlates with sex, neuropsychiatric conditions and cognition
• The Genetic Structure and East-West Population Admixture in Northwest China Inferred From Genome-Wide Array Genotyping
• Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago
• Bayesian Polynomial Regression Models to Fit Multiple Genetic Models for Quantitative Traits
• Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
• Genetic evidence for an origin of the Armenians from Bronze Age mixing of multiple populations
• Genetic evidence for an origin of the Armenians from Bronze Age mixing of multiple populations
• Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America
• Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America
• Statistical Analysis in Genetic Studies of Mental Illnesses
• Melanesian Blond Hair Is Caused by an Amino Acid Change in TYRP1
• Autosomal and uniparental portraits of the native populations of Sakha (Yakutia): implications for the peopling of Northeast Eurasia
• Hunter-gatherer genomic diversity suggests a southern African origin for modern humans
• Genetic affinities of the Jewish populations of India
• PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R
• Immunochip analyses identify a novel risk locus for primary biliary cirrhosis at 13q14, multiple independent associations at four established risk loci and epistasis between 1p31 and 7q32 risk variants
• Primary Biliary Cirrhosis Associated with HLA, IL12A, and IL12RB2 Variants
• Dense fine-mapping study identifies new susceptibility loci for primary biliary cirrhosis
• Genome-wide association study identifies 12 new susceptibility loci for primary biliary cirrhosis
• Mendelian Randomization with Incomplete Exposure Data: a Bayesian Approach
• Digital Quantification of Human Eye Color Highlights Genetic Association of Three New Loci
• Adaptive diversification of growth allometry in the plant Arabidopsis thaliana
• Ancient genomics reveals tripartite origins of Japanese populations
• Three Genome-wide Association Studies and a Linkage Analysis Identify HERC2 as a Human Iris Color Gene
• Genetic Classification of Populations Using Supervised Learning
• A Bayesian Spatial Model for Imaging Genetics
• Integrative genomic and transcriptomic analysis of hypertension in a Taiwanese population
• Ancestry analysis reveals a predominant Native American component with moderate European admixture in Bolivians
• Spatially explicit analysis reveals complex human genetic gradients in the Iberian Peninsula
• The Genetic Structure of Marijuana and Hemp
• The Peculiar Epidemiology of Dracunculiasis in Chad
• Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication
• Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences
• The genetics of an early Neolithic pastoralist from the Zagros, Iran
• Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions
• Genome-wide mapping of global-to-local genetic effects on human facial shape
• Accounting for ancestry: population substructure and genome-wide association studies
• Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure
• Whole-genome sequencing of 1,171 elderly admixed individuals from Brazil
• Phylogeographic and genome-wide investigations of Vietnam ethnic groups reveal signatures of complex historical demographic movements
• Unveiling the Genetic History of the Maniq, a Primary Hunter-Gatherer Society
• Ancestral Origins and Genetic History of Tibetan Highlanders
• The first horse herders and the impact of early Bronze Age steppe expansions into Asia
• Genome-wide analyses disclose the distinctive HLA architecture and the pharmacogenetic landscape of the Somali population
• Genetic Variability of the Grey Wolf Canis lupus in the Caucasus in Comparison with Europe and the Middle East: Distinct or Intermediary Population?
• West Asian sources of the Eurasian component in Ethiopians: a reassessment
• Genomes from Verteba cave suggest diversity within the Trypillians in Ukraine
• A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures
• Uncovering the Hidden Risk Architecture of the Schizophrenias: Confirmation in Three Independent Genome-Wide Association Studies
• New Guinea highland wild dogs are the original New Guinea singing dogs
• Rapid evolutionary response to a transmissible cancer in Tasmanian devils
• Whole genome sequencing of Turkish genomes reveals functional private alleles and impact of genetic interactions with Europe, Asia and Africa
• Turkish Population Structure and Genetic Ancestry Reveal Relatedness among Eurasian Populations
• Genetic ancestry changes in Stone to Bronze Age transition in the East European plain
• Estimates of Continental Ancestry Vary Widely among Individuals with the Same mtDNA Haplogroup
• Shared and Unique Components of Human Population Structure and Genome-Wide Signals of Positive Selection in South Asia
• A western route of prehistoric human migration from Africa into the Iberian Peninsula
• A genetic chronology for the Indian Subcontinent points to heavily sex-biased dispersals
• Genome-wide data substantiate Holocene gene flow from India to Australia
• Genetic Landscape of Slovenians: Past Admixture and Natural Selection Pattern
• A Genetic Atlas of Human Admixture History
• A predictive model using the mesoscopic architecture of the living brain to detect Alzheimer’s disease
• Demographic History and Genetic Adaptation in the Himalayan Region Inferred from Genome-Wide SNP Genotypes of 49 Populations
• Unravelling the distinct strains of Tharu ancestry
• Ancestry-Specific Analyses Reveal Differential Demographic Histories and Opposite Selective Pressures in Modern South Asian Populations
• Early Neolithic genomes from the eastern Fertile Crescent
• Genetic structure in the Sherpa and neighboring Nepalese populations
• Investigating the West Eurasian ancestry of Pakistani Hazaras
• The Andaman Islanders in a Regional Genetic Context: Reexamining the Evidence for an Early Peopling of the Archipelago from South Asia
• Genetic Affinity of the Bhil, Kol and Gond Mentioned in Epic Ramayana
• Genetic Analysis of Chemosensory Traits in Human Twins
• Genetic ancestry changes in Stone to Bronze Age transition in the East European plain
• Computationally efficient whole-genome regression for quantitative and binary traits
• Community-engaged ancient DNA project reveals diverse origins of 18th-century African descendants in Charleston, South Carolina
• The Genome of a Mongolian Individual Reveals the Genetic Imprints of Mongolians on Modern Human Populations
• Population Structure and Cryptic Relatedness in Genetic Association Studies
• Genome-wide association analysis of 350 000 Caucasians from the UK Biobank identifies novel loci for asthma, hay fever and eczema
• Global distribution of genomic diversity underscores rich complex history of continental human populations
• Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe
• Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins
• The Role of Recent Admixture in Forming the Contemporary West Eurasian Genomic Landscape
• Implications for health and disease in the genetic signature of the Ashkenazi Jewish population
• MR-MAGIC: Robust Causal Inference Using Many Weak Genetic Interactions
• Chad Genetic Diversity Reveals an African History Marked by Multiple Holocene Eurasian Migrations
• Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe
• Coevolution of genes and languages and high levels of population structure among the highland populations of Daghestan
• Dissecting the genetic structure and admixture of four geographical Malay populations
• High performance computation of landscape genomic models including local indicators of spatial association
• Genetic History of Xinjiang’s Uyghurs Suggests Bronze Age Multiple-Way Contacts in Eurasia
• The Contribution of Neanderthals to Phenotypic Variation in Modern Humans
• Genetic variability within molecular core clock genes in cluster headache
• Semiparametric Causal Discovery and Inference with Invalid Instruments
• The impact of short tandem repeat variation on gene expression
• Genomic and cranial phenotype data support multiple modern human dispersals from Africa and a southern route into Asia
• Unravelling the Genetic History of Negritos and Indigenous Populations of Southeast Asia
• Multiple Independent Loci at Chromosome 15q25.1 Affect Smoking Quantity: a Meta-Analysis and Comparison with Lung Cancer and COPD
• Genome Diversity and the Origin of the Arabian Horse
• Accurate Genomic Prediction Of Human Height
• A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation
• Analysis of genomic diversity in Mexican Mestizo populations to develop genomic medicine in Mexico
• Genetic and functional identification of the likely causative variant for cholesterol gallstone disease at the ABCG5/8 lithogenic locus
• Genome-wide association analysis identifies variation in vitamin D receptor and other host factors influencing the gut microbiota
• Population structure and genome-wide patterns of variation in Ireland and Britain
• The Irish DNA Atlas: Revealing Fine-Scale Population Structure and History within Ireland
• Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers
• Heterogeneity in Palaeolithic Population Continuity and Neolithic Expansion in North Africa
• Unravelling the hidden ancestry of American admixed populations
• Meta‐analysis of association between obsessive‐compulsive disorder and the 3′ region of neuronal glutamate transporter gene SLC1A1
• Genome-wide association study of obsessive-compulsive disorder
• Identifying Signatures of Natural Selection in Tibetan and Andean Populations Using Dense Genome Scan Data
• The Genomic History of the Bronze Age Southern Levant
• Paleogenomic Evidence for Multi-generational Mixing between Neolithic Farmers and Mesolithic Hunter-Gatherers in the Lower Danube Basin
• A second generation human haplotype map of over 3.1 million SNPs. [europepmc]
• Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. [europepmc]
• Common polygenic variation contributes to risk of schizophrenia and bipolar disorder. [europepmc]
• Genome-wide association study identifies variants at CLU and PICALM associated with Alzheimer's disease. [europepmc]
• Genome-wide association study reveals genetic risk underlying Parkinson's disease. [europepmc]
• Functional impact of global rare copy number variation in autism spectrum disorders. [europepmc]
• Common SNPs explain a large proportion of the heritability for human height. [europepmc]
• Hundreds of variants clustered in genomic loci and biological pathways affect human height. [europepmc]
• Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. [europepmc]
• MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. [europepmc]
• Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease. [europepmc]
• A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD. [europepmc]
• Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits. [europepmc]
• Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. [europepmc]
• Second-generation PLINK: rising to the challenge of larger and richer datasets. [europepmc]
• Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations. [europepmc]
• Functional mapping and annotation of genetic associations with FUMA. [europepmc]
• The Human Transcription Factors. [europepmc]
• The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019. [europepmc]
• Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder. [europepmc]
• Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. [europepmc]
• Tutorial: a guide to performing polygenic risk score analyses. [europepmc]
• Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. [europepmc]
• A cross-population atlas of genetic associations for 220 human phenotypes. [europepmc]
• Mapping genomic loci implicates genes and synaptic biology in schizophrenia. [europepmc]