Gasper Tkacik
- Optimizing information flow in small genetic networks
2009/03/31 by Gašper Tkačik, Gasper Tkacik, Aleksandra M. Walczak +1 · 8 citations
Biochemistry, Genetics and Molecular Biology · Mathematics · #Biology #Computational biology #Computer science #Evolution and Genetic Dynamics #Gene #Gene Regulatory Network Analysis #Gene regulatory network #Genetics #Information flow #Limit (mathematics) #Mathematical optimization #Mathematics #Multicellular organism #Randomness #Set (abstract data type) #Single-cell and spatial transcriptomics #Theoretical computer science #q-bio.MN
- Positional information, in bits
2011/12/30 by Julien Dubuis, Julien O. Dubuis, Gašper Tkačik +10 · 4 citations
Biochemistry, Genetics and Molecular Biology · #Developmental Biology and Gene Regulation #FOS: Biological sciences #Gene Regulatory Network Analysis #Genomics and Chromatin Dynamics #Molecular Networks (q-bio.MN) #q-bio.MN
- Ising models for networks of real neurons
2006/11/22 by Gasper Tkacik, Gašper Tkačik, Tkacik, Gasper +7 · 5 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · Engineering · Neuroscience · Physics and Astronomy · #Advanced Memory and Neural Computing #Disordered Systems and Neural Networks (cond-mat.dis-nn) #FOS: Biological sciences #FOS: Physical sciences #Neural Networks and Reservoir Computing #Neural dynamics and brain function #Neurons and Cognition (q-bio.NC) #cond-mat.dis-nn #q-bio.NC
- Faster solutions of the inverse pairwise Ising problem
2007/12/14 by Tamara Broderick, Broderick, Tamara, Miroslav Dudik +8 · 4 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · Mathematics · Physics and Astronomy · #Disordered Systems and Neural Networks (cond-mat.dis-nn) #FOS: Biological sciences #FOS: Physical sciences #Markov Chains and Monte Carlo Methods #Neurons and Cognition (q-bio.NC) #Quantitative Methods (q-bio.QM) #Quantum Computing Algorithms and Architecture #Quantum chaos and dynamical systems #cond-mat.dis-nn #q-bio.NC #q-bio.QM
- Spin glass models for a network of real neurons
2009/12/30 by Gasper Tkacik, Tkacik, Gasper, Elad Schneidman +5 · 3 citations
Biochemistry, Genetics and Molecular Biology · #FOS: Biological sciences #Neurons and Cognition (q-bio.NC) #q-bio.NC
- Relevant sparse codes with variational information bottleneck
2016/05/24 by Matthew Chalk, Olivier Marre, Chalk, Matthew +3 · 2 citations
Mathematics · #FOS: Computer and information sciences #Machine Learning (stat.ML) #stat.ML
- Estimating mutual information and multi--information in large networks
2005/02/03 by Noam Slonim, Gurinder S. Atwal, Slonim, Noam +6 · 2 citations
Computer Science · Mathematics · Physics and Astronomy · #Artificial Intelligence (cs.AI) #Complex Network Analysis Techniques #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #Information Theory (cs.IT) #Machine Learning (cs.LG) #Opinion Dynamics and Social Influence #cs.AI #cs.CV #cs.IT #cs.LG #math.IT
- The role of input noise in transcriptional regulation
2007/01/22 by Gasper Tkacik, Thomas Gregor, William Bialek · 1 citation
Biochemistry, Genetics and Molecular Biology · #q-bio.MN #q-bio.CB
- Information flow and optimization in transcriptional control
2007/05/02 by Gasper Tkacik, Curtis G Callan Jr, William Bialek · 1 citation
Biochemistry, Genetics and Molecular Biology · #q-bio.MN
- The simplest maximum entropy model for collective behavior in a neural network
2012/07/26 by Gasper Tkacik, Olivier Marre, Thierry Mora +3 · 1 citation
Biochemistry, Genetics and Molecular Biology · Physics and Astronomy · #cond-mat.dis-nn #cond-mat.stat-mech #q-bio.NC