Pranam Chatterjee
- AlloGen: Conformation-Selective Binder Generation with Differential State Scoring
2026/06/03 by Hanqun Cao, Zachary Quinn, Aastha Pal +4 · 3 voices
Biochemistry, Genetics and Molecular Biology · Computer Science · #q-bio.BM #cs.LG
- mRNAutilus: Multi-Objective-Guided Discrete Generation of mRNA with Optimized Therapeutic Properties
2026/05/29 by Sawan Patel, Sophia Tang, Yesol Kim +8 · 2 voices
Biochemistry, Genetics and Molecular Biology · Computer Science · #CRISPR and Genetic Engineering #Coding region #Generative model #Luciferase #Messenger RNA #Proteome #RNA Interference and Gene Delivery #RNA and protein synthesis mechanisms #Sequence (biology) #Start codon #Translation (biology) #Untranslated region #cs.LG #q-bio.BM
- TD3B: Transition-Directed Discrete Diffusion for Allosteric Binder Generation
2026/05/10 by Hanqun Cao, Aastha Pal, Sophia Tang +4 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #cs.LG #q-bio.BM
- Rethinking Benchmarks and Models for Enzyme Specificity Prediction
2026/07/06 by Elizabeth H. Mahood, Natália Komorníková, Tomáš Pluskal +1 · 2 voices
Biochemistry, Genetics and Molecular Biology · #q-bio.BM
- A foundation model for microbial growth dynamics
2025/12/03 by Zachary A. Holmes, Irida Shyti, Alexandra L. Hoffman +28 · 1 voice
Biochemistry, Genetics and Molecular Biology · #Bacterial Genetics and Biotechnology #Evolution and Genetic Dynamics #Gut microbiota and health
- SF-Cluster: Frustration-Guided MSA Subsampling for Alternative Protein Conformation Recovery
2026/06/30 by Hanqun Cao, Zijun Gao, Chunbin Gu +3 · 1 voice
Biochemistry, Genetics and Molecular Biology · #q-bio.BM
- Minimal-Action Discrete Schrödinger Bridge Matching for Peptide Sequence Design
2026/01/29 by Shrey Goel, Pranam Chatterjee · 1 voice
Biochemistry, Genetics and Molecular Biology · Computer Science · #cs.LG #q-bio.BM