Medvedev, Paul
- Informed and Automated k-Mer Size Selection for Genome Assembly
2013/04/20 by Rayan Chikhi, Paul Medvedev, Chikhi, Rayan +1 · 8 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Chromosomal and Genetic Variations #Evolution and Genetic Dynamics #Genomics and Phylogenetic Studies #q-bio.GN
- Modeling Biological Problems in Computer Science: A Case Study in Genome Assembly
2017/06/16 by Paul Medvedev, Medvedev, Paul · 1 voice · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Data Structures and Algorithms (cs.DS) #Discrete Mathematics (cs.DM) #FOS: Biological sciences #FOS: Computer and information sciences #Genome Rearrangement Algorithms #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #cs.DM #cs.DS #q-bio.GN
- On the representation of de Bruijn graphs
2014/01/21 by Rayan Chikhi, Antoine Limasset, Chikhi, Rayan +9 · 2 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Chromosomal and Genetic Variations #Data Structures and Algorithms (cs.DS) #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Quantitative Methods (q-bio.QM) #cs.DS #q-bio.GN #q-bio.QM
- TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes
2016/02/18 by Ilia Minkin, Minkin, Ilia, Son Pham +3 · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · #68 #Data Structures and Algorithms (cs.DS) #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Chromatin Dynamics #Genomics and Phylogenetic Studies #Machine Learning in Bioinformatics #cs.DS #msc:68 #q-bio.GN
- Data structures to represent a set of k-long DNA sequences
2019/03/29 by Rayan Chikhi, Jan Holub, Chikhi, Rayan +3 · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #DNA and Biological Computing #Data Structures and Algorithms (cs.DS) #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies