Rayan Chikhi
- Giraffe genome sequence reveals clues to its unique morphology and physiology
2016/05/17 by Morris Agaba, Edson Ishengoma, Webb Miller +13 · 1 voice · 34 citations
Biochemistry, Genetics and Molecular Biology · #Mitochondrial Function and Pathology #Genetic Mapping and Diversity in Plants and Animals #Lipid metabolism and biosynthesis
- Logan: Planetary-Scale Genome Assembly Surveys Life’s Diversity
2024/07/31 by Rayan Chikhi, Téo Lemane, Raphaël Loll-Krippleber +28 · 2 voices · 40 citations
Biochemistry, Genetics and Molecular Biology · #Genomics and Phylogenetic Studies #RNA and protein synthesis mechanisms #Gene expression and cancer classification
- High-quality metagenome assembly from long accurate reads with metaMDBG
2024/01/02 by Gaëtan Benoit, Sébastien Raguideau, Robert James +3 · 1 voice · 15 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · Agricultural and Biological Sciences · #Genomics and Phylogenetic Studies #Bacteriophages and microbial interactions #Plant Virus Research Studies
- Informed and Automated k-Mer Size Selection for Genome Assembly
2013/04/20 by Rayan Chikhi, Paul Medvedev, Chikhi, Rayan +1 · 5 citations
Biochemistry, Genetics and Molecular Biology · Agricultural and Biological Sciences · #Genomics and Phylogenetic Studies #Chromosomal and Genetic Variations #Evolution and Genetic Dynamics
- BFVD—a large repository of predicted viral protein structures
2024/10/28 by Rachel Seongeun Kim, Eli Levy Karin, Milot Mirdita +2 · 2 voices · 4 citations
Environmental Science · Biochemistry, Genetics and Molecular Biology · #Bacteriophages and microbial interactions #Genomics and Phylogenetic Studies #RNA and protein synthesis mechanisms
- On the representation of de Bruijn graphs
2014/01/21 by Rayan Chikhi, Chikhi, Rayan, Antoine Limasset +7 · 1 citation
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Chromosomal and Genetic Variations #Data Structures and Algorithms (cs.DS) #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Quantitative Methods (q-bio.QM)
- Parallel decompression of gzip-compressed files and random access to DNA sequences
2019/05/17 by Maël Kerbiriou, Rayan Chikhi, Kerbiriou, Maël +1 · 1 voice
Computer Science · #Advanced Data Storage Technologies #Algorithms and Data Compression #Data Structures and Algorithms (cs.DS) #Distributed #FOS: Computer and information sciences #Parallel #Parallel Computing and Optimization Techniques #and Cluster Computing (cs.DC) #cs.DC #cs.DS