Gene W. Tyson
- CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning
2023/07/27 by Alex Chklovski, Donovan H. Parks, Ben J. Woodcroft +1 · 103 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Gut microbiota and health #Microbial Community Ecology and Physiology
- CoverM: read alignment statistics for metagenomics
2025/01/20 by Samuel T. N. Aroney, R.B. Newell, Rhys J. P. Newell +7 · 1 voice · 37 citations
Environmental Science · Biochemistry, Genetics and Molecular Biology · #Microbial Community Ecology and Physiology #Gut microbiota and health #Genomics and Phylogenetic Studies
- SingleM and Sandpiper: Robust microbial taxonomic profiles from metagenomic data
2024/01/31 by Ben J. Woodcroft, Samuel T. N. Aroney, Rossen Zhao +4 · 1 voice · 6 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Metabolomics and Mass Spectrometry Studies #Microbial Community Ecology and Physiology
- Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes
2025/11/13 by Samuel T. N. Aroney, Rhys J. P. Newell, R.B. Newell +2 · 2 voices · 7 citations
Biochemistry, Genetics and Molecular Biology · #Genomics and Phylogenetic Studies #Genome Rearrangement Algorithms #Gut microbiota and health
- Comprehensive taxonomic identification of microbial species in metagenomic data using SingleM and Sandpiper
2025/07/16 by Ben J. Woodcroft, Samuel T. N. Aroney, Rossen Zhao +8 · 1 voice · 7 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Gut microbiota and health #Microbial Community Ecology and Physiology
- Bin Chicken: targeted metagenomic coassembly for the efficient recovery of novel genomes
2024/11/25 by Samuel T. N. Aroney, R.B. Newell, Gene W. Tyson +1 · 1 voice · 1 citation
Biochemistry, Genetics and Molecular Biology · #Genomics and Phylogenetic Studies #Animal Genetics and Reproduction #Genetics, Bioinformatics, and Biomedical Research
- Population ecology and biogeochemical implications of ssDNA and dsDNA viruses along a permafrost thaw gradient
2025/12/11 by Gareth Trubl, Simon Roux, Mikayla Borton +11 · 1 voice · 2 citations
Environmental Science · Earth and Planetary Sciences · #Bacteriophages and microbial interactions #Climate change and permafrost #Polar Research and Ecology
- GenomeFISH: genome-based fluorescence in situ hybridization for strain-level visualization of microbial communities
2025/01/01 by J Pamela Engelberts, Jun Ye, Donovan H. Parks +6 · 2 voices
Biochemistry, Genetics and Molecular Biology · Medicine · #Genomics and Phylogenetic Studies #Tracheal and airway disorders #Mycobacterium research and diagnosis