Andrew Rambaut
- Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
2018/04/24 by Andrew Rambaut, Alexei J. Drummond, Alexei J Drummond +4 · 323 citations
Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Evolution and Paleontology Studies #Genetic diversity and population structure #Genomics and Phylogenetic Studies
- A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology
2020/07/15 by Andrew Rambaut, Edward C. Holmes, Áine O’Toole +5 · 31 citations
Biochemistry, Genetics and Molecular Biology · Medicine · #Genomics and Phylogenetic Studies #SARS-CoV-2 and COVID-19 Research #vaccines and immunoinformatics approaches
- Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak
2014/08/29 by Stephen K. Gire, Stephen Gire, Augustine Goba +69 · 35 citations
Medicine · #Viral Infections and Outbreaks Research #Viral Infections and Vectors #Zoonotic diseases and public health
- SARS-CoV-2 variants, spike mutations and immune escape
2021/06/01 by William T. Harvey, Alessandro M. Carabelli, Ben Jackson +8 · 24 citations
Biochemistry, Genetics and Molecular Biology · Medicine · #SARS-CoV-2 and COVID-19 Research #SARS-CoV-2 detection and testing #vaccines and immunoinformatics approaches
- Global circulation patterns of seasonal influenza viruses vary with antigenic drift
2015/06/08 by Trevor Bedford, Steven Riley, Ian G. Barr +25 · 14 citations
Medicine · #Influenza Virus Research Studies #Respiratory viral infections research #Viral Infections and Vectors
- Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
2021/07/05 by Áine O’Toole, Emily Scher, Anthony Underwood +16 · 17 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Bacteriophages and microbial interactions #Genomics and Phylogenetic Studies #Plant Virus Research Studies
- Measurably evolving populations
2003/08/01 by Alexei J. Drummond, Oliver G. Pybus, Andrew Rambaut +2 · 1 voice · 6 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Evolution and Genetic Dynamics #Genomics and Phylogenetic Studies #Plant Virus Research Studies
- The proximal origin of SARS-CoV-2
2020/03/17 by Kristian G. Andersen, Andrew Rambaut, W. Ian Lipkin +2 · 1 voice · 22 citations
Medicine · #COVID-19 Clinical Research Studies #SARS-CoV-2 and COVID-19 Research #SARS-CoV-2 detection and testing
- Origins of the 2009 H1N1 influenza pandemic in swine in Mexico
2016/06/27 by Ignacio Mena, Martha I. Nelson, Francisco Quezada-Monroy +10 · 1 voice · 7 citations
Agricultural and Biological Sciences · Medicine · #Animal Disease Management and Epidemiology #Influenza Virus Research Studies #Respiratory viral infections research
- BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics
2019/04/11 by Daniel L Ayres, Daniel L. Ayres, Michael P. Cummings +14 · 10 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Evolution and Genetic Dynamics #Genomics and Phylogenetic Studies
- BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference
2025/07/07 by Guy Baele, Xiang Ji, Gabriel W. Hassler +8 · 2 voices · 22 citations
Earth and Planetary Sciences · Biochemistry, Genetics and Molecular Biology · #Evolution and Paleontology Studies #Genomics and Phylogenetic Studies #Genetic diversity and population structure
- APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016
2023/11/02 by Áine O’Toole, Richard A. Neher, Nnaemeka Ndodo +18 · 1 voice · 7 citations
Biochemistry, Genetics and Molecular Biology · Immunology and Microbiology · Medicine · #Bacillus and Francisella bacterial research #Herpesvirus Infections and Treatments #Poxvirus research and outbreaks
- Inferring Heterogeneous Evolutionary Processes Through Time: from\n sequence substitution to phylogeography
2013/09/12 by Filip Bielejec, Philippe Lemey, Bielejec, Filip +7 · 3 citations
Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Computation (stat.CO) #Evolution and Paleontology Studies #FOS: Biological sciences #FOS: Computer and information sciences #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE)
- The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
2022/07/26 by Jonathan E. Pekar, Andrew F. Magee, Edyth Parker +26 · 2 voices · 6 citations
Medicine · Mathematics · #SARS-CoV-2 and COVID-19 Research #Viral Infections and Outbreaks Research #COVID-19 epidemiological studies
- Integrating influenza antigenic dynamics with molecular evolution
2013/04/12 by Trevor Bedford, Bedford, Trevor, Marc A. Suchard +17 · 3 citations
Medicine · Environmental Science · #Influenza Virus Research Studies #Bacteriophages and microbial interactions #Virology and Viral Diseases
- On the importance of assessing topological convergence in Bayesian phylogenetic inference
2024/02/18 by Marius Brusselmans, Brusselmans, Marius, Luiz Max Carvalho +17 · 2 voices · 2 citations
#q-bio.PE #q-bio.GN #q-bio.QM
- The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
2025/05/07 by Jonathan E. Pekar, Spyros Lytras, Mahan Ghafari +16 · 3 voices · 2 citations
Medicine · Mathematics · #SARS-CoV-2 and COVID-19 Research #COVID-19 epidemiological studies #Viral Infections and Outbreaks Research
- Genomics reveals zoonotic and sustained human mpox spread in West Africa
2025/05/19 by Edyth Parker, Ifeanyi F. Omah, Délia Doreen Djuicy +59 · 1 voice · 3 citations
Biochemistry, Genetics and Molecular Biology · Immunology and Microbiology · Medicine · #Bacillus and Francisella bacterial research #Poxvirus research and outbreaks #Zoonotic diseases and public health
- Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived
2025/01/01 by Jonathan E. Pekar, Niema Moshiri, Philippe Lemey +8 · 2 voices · 2 citations
Medicine · Agricultural and Biological Sciences · #SARS-CoV-2 and COVID-19 Research #Animal Virus Infections Studies #Viral gastroenteritis research and epidemiology