Shen, Yiqing
- SAM-Med3D: Towards General-purpose Segmentation Models for Volumetric Medical Images
2023/10/23 by Haoyu Wang, Sizheng Guo, Wang, Haoyu +25 · 34 citations
Medicine · Computer Science · #COVID-19 diagnosis using AI #Radiomics and Machine Learning in Medical Imaging #Advanced Neural Network Applications
- M4oE: A Foundation Model for Medical Multimodal Image Segmentation with Mixture of Experts
2024/05/15 by Jiang, Yufeng, Shen, Yiqing · 11 citations
#FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- A Survey for Foundation Models in Autonomous Driving
2024/02/02 by Haoxiang Gao, Gao, Haoxiang, Wang, Zhongruo +8 · 8 citations
Engineering · #Autonomous Vehicle Technology and Safety
- Graph Denoising Diffusion for Inverse Protein Folding
2023/06/29 by Kai Yi, Yi, Kai, Bingxin Zhou +7 · 1 voice · 5 citations
Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning in Bioinformatics #Protein Structure and Dynamics #Quantitative Methods (q-bio.QM) #RNA and protein synthesis mechanisms
- A Fine-tuning Dataset and Benchmark for Large Language Models for Protein Understanding
2024/06/08 by Yiqing Shen, Zan Chen, Shen, Yiqing +15 · 5 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Artificial Intelligence (cs.AI) #Biomedical Text Mining and Ontologies #Computation and Language (cs.CL) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Quantitative Methods (q-bio.QM) #Topic Modeling
- TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation
2023/07/16 by He, Zhenqi, Unberath, Mathias, Ke, Jing +1 · 3 citations
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- TourSynbio-Search: A Large Language Model Driven Agent Framework for Unified Search Method for Protein Engineering
2024/11/09 by Liu, Yungeng, Chen, Zan, Wang, Yu Guang +1 · 4 citations
#FOS: Biological sciences #Quantitative Methods (q-bio.QM)
- AutoP2C: An LLM-Based Agent Framework for Code Repository Generation from Multimodal Content in Academic Papers
2025/04/28 by Lin, Zijie, Shen, Yiqing, Cai, Qilin +3 · 8 citations
#Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Software Engineering (cs.SE)
- AutoProteinEngine: A Large Language Model Driven Agent Framework for Multimodal AutoML in Protein Engineering
2024/11/07 by Y. Liu, Liu, Yungeng, Zan Chen +5 · 4 citations
Computer Science · Social Sciences · #FOS: Biological sciences #Quantitative Methods (q-bio.QM) #Software Engineering Research #Topic Modeling #Wikis in Education and Collaboration
- AutoM3L: An Automated Multimodal Machine Learning Framework with Large Language Models
2024/08/01 by Daqin Luo, Chengjian Feng, Luo, Daqin +5 · 4 citations
Computer Science · #Natural Language Processing Techniques #Topic Modeling
- RBench-V: A Primary Assessment for Visual Reasoning Models with Multi-modal Outputs
2025/05/22 by Guo, Meng-Hao, Chu, Xuanyu, Yang, Qianrui +12 · 7 citations
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences
- FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images
2024/03/14 by Shen, Yiqing, Li, Jingxing, Shao, Xinyuan +4 · 3 citations
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- Performance and Non-adversarial Robustness of the Segment Anything Model 2 in Surgical Video Segmentation
2024/08/07 by Shen, Yiqing, Ding, Hao, Shao, Xinyuan +1 · 3 citations
#FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- DiffImpute: Tabular Data Imputation With Denoising Diffusion Probabilistic Model
2024/03/20 by Yizhu Wen, Wen, Yizhu, Kai Yi +5 · 2 citations
Computer Science · #Artificial Intelligence (cs.AI) #Bayesian Methods and Mixture Models #Databases (cs.DB) #FOS: Computer and information sciences #Machine Learning (cs.LG)
- Online Reasoning Video Segmentation with Just-in-Time Digital Twins
2025/03/27 by Shen, Yiqing, Liu, Bohan, Li, Chenjia +2 · 7 citations
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- CD2-pFed: Cyclic Distillation-guided Channel Decoupling for Model Personalization in Federated Learning
2022/04/08 by Shen, Yiqing, Zhou, Yuyin, Yu, Lequan · 1 citation
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #Machine Learning (cs.LG)
- A Survey of Scientific Large Language Models: From Data Foundations to Agent Frontiers
2025/08/28 by Mingjun Hu, Hu, Ming, Chenglong Ma +214 · 9 citations
Computer Science · Materials Science · Medicine · #Artificial Intelligence (cs.AI) #Artificial Intelligence in Healthcare and Education #Computation and Language (cs.CL) #FOS: Computer and information sciences #Machine Learning in Materials Science #Topic Modeling
- Promptable Counterfactual Diffusion Model for Unified Brain Tumor Segmentation and Generation with MRIs
2024/07/17 by Yiqing Shen, Guannan He, Shen, Yiqing +3 · 2 citations
Neuroscience · #Brain Tumor Detection and Classification #FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- Counterfactual World Models via Digital Twin-conditioned Video Diffusion
2025/11/21 by Yiqing Shen, Shen, Yiqing, Aiza Maksutova +5 · 1 voice
Computer Science · #Domain Adaptation and Few-Shot Learning #Generative Adversarial Networks and Image Synthesis #Multimodal Machine Learning Applications #cs.CV
- MoViT: Memorizing Vision Transformers for Medical Image Analysis
2023/03/27 by Shen, Yiqing, Guo, Pengfei, Wu, Jingpu +5 · 1 citation
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences
- Operating Room Workflow Analysis via Reasoning Segmentation over Digital Twins
2025/03/26 by Shen, Yiqing, Li, Chenjia, Liu, Bohan +3 · 5 citations
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- Position: Foundation Models Need Digital Twin Representations
2025/05/01 by Shen, Yiqing, Ding, Hao, Seenivasan, Lalithkumar +2 · 5 citations
#Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Machine Learning (cs.LG)
- RVTBench: A Benchmark for Visual Reasoning Tasks
2025/05/17 by Shen, Yiqing, Li, Chenjia, Fan, Chenxiao +1 · 7 citations
#Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences
- Towards the Unification of Generative and Discriminative Visual Foundation Model: A Survey
2023/12/15 by Xu Liu, Tong Zhou, Liu, Xu +17 · 1 citation
Computer Science · #Advanced Image and Video Retrieval Techniques #Computer Vision and Pattern Recognition (cs.CV) #Domain Adaptation and Few-Shot Learning #FOS: Computer and information sciences #Machine Learning (cs.LG) #Multimodal Machine Learning Applications
- ProteinEngine: Empower LLM with Domain Knowledge for Protein Engineering
2024/04/21 by Shen, Yiqing, Lv, Outongyi, Zhu, Houying +1 · 1 citation
#Artificial Intelligence (cs.AI) #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG)
- Multimodal Medical Image Binding via Shared Text Embeddings
2025/06/22 by Liu, Yunhao, Xi, Suyang, Liu, Shiqi +6 · 2 citations
#Artificial Intelligence (cs.AI) #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering
- TourSynbio: A Multi-Modal Large Model and Agent Framework to Bridge Text and Protein Sequences for Protein Engineering
2024/08/27 by Yiqing Shen, Shen, Yiqing, Michail Mamalakis +14 · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · #Artificial Intelligence (cs.AI) #Biomolecules (q-bio.BM) #Evolutionary Algorithms and Applications #FOS: Biological sciences #FOS: Computer and information sciences #Genetics, Bioinformatics, and Biomedical Research #Machine Learning (cs.LG) #Machine Learning in Bioinformatics
- BioMedSearch: A Multi-Source Biomedical Retrieval Framework Based on LLMs
2025/10/15 by Liu, Congying, Wei, Xingyuan, Liu, Peipei +3 · 1 citation
#Computation and Language (cs.CL) #FOS: Computer and information sciences
- TSCnet: A Text-driven Semantic-level Controllable Framework for Customized Low-Light Image Enhancement
2025/03/11 by Miao Zhang, Jun Yin, Zhang, Miao +9 · 1 citation
Computer Science · #Computer Vision and Pattern Recognition (cs.CV) #Data Visualization and Analytics #FOS: Computer and information sciences #Image Enhancement Techniques
- An Agent Framework for Real-Time Financial Information Searching with Large Language Models
2024/12/14 by Jinzheng Li, Jingshu Zhang, Li, Jinzheng +5 · 1 citation
Computer Science · Decision Sciences · #Artificial Intelligence (cs.AI) #Distributed and Parallel Computing Systems #FOS: Computer and information sciences #Information Retrieval (cs.IR) #Multi-Agent Systems and Negotiation #Stock Market Forecasting Methods
- Mitigating Hallucinations in Large Language Models via Causal Reasoning
2025/08/17 by Y. Li, Yiqing Shen, Li, Yuangang +17 · 4 citations
Computer Science · #Machine Learning in Healthcare
- Enhancing LLMs' Reasoning-Intensive Multimedia Search Capabilities through Fine-Tuning and Reinforcement Learning
2025/05/24 by Jinzheng Li, Li, Jinzheng, Sibo Ju +7 · 2 citations
Computer Science · #Digital Rights Management and Security #FOS: Computer and information sciences #Information Retrieval (cs.IR) #Open Education and E-Learning #Peer-to-Peer Network Technologies