Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

2014/01/09 by Michael J. Moore, Michael J Moore, Chaolin Zhang +7 · 3 citations
Biochemistry, Genetics and Molecular Biology · #Argonaute #Biology #Computational biology #Gene #Genetics #Immunoprecipitation #RNA #RNA Research and Splicing #RNA and protein synthesis mechanisms #RNA interference #RNA modifications and cancer #RNA-binding protein #microRNA

paper · doi:10.1038/nprot.2014.012

crossref issued 2014/01/09 · crossref published 2014/01/09 · crossref published-online 2014/01/09 · openalex publication_date 2014/01/09 · crossref created 2014/01/09 · crossref published-print 2014/02/01 · openalex created_date 2016/06/24 · crossref deposited 2023/05/19 · crossref indexed 2026/07/03 · openalex updated_date 2026/07/15

Citations

• Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain
• HITS-CLIP yields genome-wide insights into brain alternative RNA processing
• FMRP Stalls Ribosomal Translocation on mRNAs Linked to Synaptic Function and Autism
• Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP
• Neuronal Elav-like (Hu) Proteins Regulate RNA Splicing and Abundance to Control Glutamate Levels and Neuronal Excitability
• Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts
• Muscleblind-like 2-Mediated Alternative Splicing in the Developing Brain and Dysregulation in Myotonic Dystrophy
• iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution
• Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis
• 4-thiouridine inhibits rRNA synthesis and causes a nucleolar stress response
• Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
• Characterizing the RNA targets and position-dependent splicing regulation by TDP-43
• Evidence for reassociation of RNA-binding proteins after cell lysis: Implications for the interpretation of immunoprecipitation analyses

Cited by

• Advances in CLIP Technologies for Studies of Protein-RNA Interactions
• CLIP and complementary methods
• Cross-linking immunoprecipitation [wikipedia]