Taming the complexity of protein folding

2010/11/15 by Gregory R. Bowman, Gregory R Bowman, Vincent A. Voelz +3 · 3 citations
Biochemistry, Genetics and Molecular Biology · Engineering · Materials Science · Psychology · #Biology #Cell biology #Cognitive science #Computational biology #Computer science #Data science #Engineering #Enzyme Structure and Function #Folding (DSP implementation) #Machine learning #Markov chain #Protein Structure and Dynamics #Protein folding #Psychology #RNA and protein synthesis mechanisms

paper · doi:10.1016/j.sbi.2010.10.006

openalex publication_date 2010/11/15 · crossref created 2010/11/15 · crossref issued 2011/02/01 · crossref published 2011/02/01 · crossref published-print 2011/02/01 · crossref deposited 2019/06/06 · openalex created_date 2025/10/10 · crossref indexed 2026/02/26 · openalex updated_date 2026/08/01

Citations

• Protein folding funnels: a kinetic approach to the sequence-structure relationship.
• Accelerating molecular dynamic simulation on graphics processing units
• Enhanced Modeling via Network Theory: Adaptive Sampling of Markov State Models
• Heterogeneity Even at the Speed Limit of Folding: Large-scale Molecular Dynamics Study of a Fast-folding Variant of the Villin Headpiece
• Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing
• Towards a Theory of Transition Paths
• Coarse-grained models of protein folding: toy models or predictive tools?
• Quantitative comparison of villin headpiece subdomain simulations and triplet–triplet energy transfer experiments
• TRANSITIONPATHSAMPLING: Throwing Ropes Over Rough Mountain Passes, in the Dark
• Protein folded states are kinetic hubs
• Scalable molecular dynamics with NAMD
• GROMACS: Fast, flexible, and free
• Funnels, pathways, and the energy landscape of protein folding: A synthesis

Cited by

• Studying functional dynamics in bio-molecules using accelerated molecular dynamics
• Coarse-Grained Protein Models and Their Applications
• Folding@home [wikipedia]