Using machine learning to enhance and accelerate synthetic biology

2024/08/02 by Kshitij Rai, Yiduo Wang, Ronan W. O'Connell +4 · 1 voice
Biochemistry, Genetics and Molecular Biology · Engineering · #Artificial intelligence #Biochemical engineering #Biology #CRISPR and Genetic Engineering #Computational biology #Computer science #Context (archaeology) #Engineering #Function (biology) #Gene Regulatory Network Analysis #Pace #Process (computing) #RNA and protein synthesis mechanisms #Scope (computer science) #Synthetic biology #Workflow

paper · doi:10.1016/j.cobme.2024.100553

openalex publication_date 2024/08/02 · crossref created 2024/08/02 · crossref issued 2024/09/01 · crossref published 2024/09/01 · crossref published-print 2024/09/01 · crossref deposited 2024/11/25 · openalex created_date 2025/10/10 · crossref indexed 2026/07/25 · openalex updated_date 2026/08/06

Citations

• WaveNet: A Generative Model for Raw Audio
• Active Learning for Speech Recognition: the Power of Gradients
• A high-bias, low-variance introduction to Machine Learning for physicists
• Deep Inside Convolutional Networks: Visualising Image Classification Models and Saliency Maps
• Expanded encyclopaedias of DNA elements in the human and mouse genomes
• Highly accurate protein structure prediction with AlphaFold
• Accurate prediction of protein structures and interactions using a three-track neural network
• Effective gene expression prediction from sequence by integrating long-range interactions
• Harnessing the power of artificial intelligence to advance cell therapy
• Sequence modeling and design from molecular to genome scale with Evo
• A Whole-Cell Computational Model Predicts Phenotype from Genotype
• Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
• Construction of a genetic toggle switch in Escherichia coli
• Genetic circuit design automation
• Coming of age: ten years of next-generation sequencing technologies
• Mastering the game of Go without human knowledge
• Definitions, methods, and applications in interpretable machine learning
• A mobile robotic chemist
• Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo

Discussions

• Using machine learning to enhance and accelerate synthetic biology doi.org/10.1016/j.co... [bsky, 0 points, 0 comments]