Efficient and robust search of microbial genomes via phylogenetic compression

2025/04/01 by Karel Břinda, Leandro Lima, Simone Pignotti +8 · 1 voice
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Genomics and Phylogenetic Studies #Machine Learning in Bioinformatics

paper · doi:10.1038/s41592-025-02625-2

crossref issued 2025/04/01 · crossref published 2025/04/01 · crossref published-print 2025/04/01 · openalex publication_date 2025/04/01 · crossref published-online 2025/04/09 · crossref created 2025/04/09 · crossref deposited 2025/04/09 · openalex created_date 2025/10/10 · crossref indexed 2026/07/11 · openalex updated_date 2026/07/30

Citations

• Basic local alignment search tool
• ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
• Entropy-scaling search of massive biological data
• Ultrafast search of all deposited bacterial and viral genomic data
• Compressive genomics

Discussions

• Links: 📄 Paper: doi.org/10.1038/s415... 📄 ReadCube: rdcu.be/eg4OA 🛠 Project hub (software + data): brinda.eu/mof 🧵 Parallel thread from @baym.lol: bsky.app/profile/baym... End for today. 15/ [bsky, 1 points, 1 comments]