Compressive genomics

2012/07/01 by Po-Ru Loh, Po‐Ru Loh, Michael Baym +1 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Gene expression and cancer classification #Single-cell and spatial transcriptomics

paper · doi:10.1038/nbt.2241

crossref issued 2012/07/01 · crossref published 2012/07/01 · crossref published-print 2012/07/01 · openalex publication_date 2012/07/01 · crossref published-online 2012/07/10 · crossref created 2012/07/10 · crossref deposited 2023/05/18 · openalex created_date 2025/10/10 · crossref indexed 2026/05/07 · openalex updated_date 2026/07/28

Citations

• Basic local alignment search tool

Cited by

• Efficient and robust search of microbial genomes via phylogenetic compression
• Scalable metagenomic taxonomy classification using a reference genome database

Discussions

• This isn't new. In 2012, @baym.lol et al. saw this – even before genomic data got truly big – and proposed a fix: compressive genomics (doi.org/10.1038/nbt....). As data grow, so does redundancy. To [bsky, 1 points, 1 comments]