MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

2013/01/16 by Kazutaka Katoh, K. Katoh, D. M. Standley +1 · 1,694 citations
Biochemistry, Genetics and Molecular Biology · #Bacterial Genetics and Biotechnology #Genomics and Phylogenetic Studies #RNA and protein synthesis mechanisms

paper · pdf · doi:10.1093/molbev/mst010

openalex publication_date 2013/01/16 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/31

Abstract

We report a major update of the MAFFT multiple sequence alignment program. This version has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update. This report shows actual examples to explain how these features work, alone and in combination. Some examples incorrectly aligned by MAFFT are also shown to clarify its limitations. We discuss how to avoid misalignments, and our ongoing efforts to overcome such limitations.

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• RETRACTED: Integrative phylogenomics positions sponges at the root of the animal tree
• Lifestyles shape genome size and gene content in fungal pathogens
• Ecological success in freshwater lakes: insights from novel cultivated lineages of the abundant Nanopelagicales order
• Contrasting genetic diversity and ecological niche modelling of the montane grass mouse Akodon montensis in the south of the Atlantic Forest
• Diversification of the Staphylococcal Cassette Chromosome Through Distinct Mechanisms of Horizontal Transfer
• Deciphering the biosynthetic pathways of lichen acids
• PhyloFisher: A phylogenomic package for resolving eukaryotic relationships
• Genetic basis for broad interspecific compatibility in Solanum verrucosum
• DNA barcoding and cryptic new species confirmation of Chimonocalamus (Poaceae: Bambusoideae)
• Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium
• Magniporophytum gen. nov. and Orientalilithon gen. nov. (Hapalidiales, Corallinophycidae): Two new genera of coralline red algae from the Pacific Ocean, including the description of three new species
• A timetree of Fungi dated with fossils and horizontal gene transfers
• Rapid Radiations Outweigh Reticulations During the Evolution of a 750-Million-Year-Old Lineage of Cyanobacteria
• KIPEs3: Automatic annotation of biosynthesis pathways
• A pre-vertebrate endodermal origin of calcitonin-producing neuroendocrine cells
• Genomic and phylogenetic features of the Picobirnaviridae suggest microbial rather than animal hosts
• Cell Compartment is a Predictor of Protein Rate of Evolution, but not in the Manner Expected: Evidence Against the Extended Complexity Hypothesis
• Dissecting the genetic basis of bioactive metabolites and fruit quality traits in blueberries (Vaccinium corymbosum L.)
• Order of amino acid recruitment into the genetic code resolved by last universal common ancestor’s protein domains
• Expanding the human gut microbiome atlas of Africa
• Polyphyly in a morphologically defined genus: phylogeny and morphology of Pseudobuliminus (Eupulmonata: Camaenidae) from eastern and northern China, with a checklist of species from mainland China
• Evidence for corrin biosynthesis in the last universal common ancestor
• A fungal sRNA silences a host plant transcription factor to promote arbuscular mycorrhizal symbiosis
• Sedum simingshanense (Crassulaceae), a new species from Zhejiang, East China
• Genome assembly of Bougainvillia cf. muscus (Cnidaria: Hydrozoa)
• Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
• Genomic Insights Into Convergent Evolution: Adaptation to Rocky Habitats in Rock-Inhabiting Fungi
• Ancient genomics support deep divergence between Eastern and Western Mediterranean Indo-European languages
• Colonial Entoproct Epibiotic on a Sea Spider
• Phylogenetics and evolution of Digitaria grasses, including cereal crops fonio, raishan and Polish millet
• High Conservation of Translation-Enabling RNA Editing Sites in Hyper-editing Ferns Implies They Are Not Selectively Neutral
• Plant DNA barcoding necessitates marker-specific efforts to establish more comprehensive reference databases
• Big jaw, small genome: first description of the mitochondrial genome of Odontomachus (Formicidae, Ponerinae): evolutionary implications for Ponerinae ants.
• A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny
• Assembling genomes of non‐model plants: A case study with evolutionary insights from Ranunculus (Ranunculaceae)
• High-Quality Draft Genome Assemblies and Comparative Genomics of Three Bouteloua Species (Poaceae: Chloridoideae)
• Phylogenetic assessment and taxonomic revision of Scytalidium (Helotiales, Leotiomycetes)
• Arthropod Pax Gene Evolution: A Role for Vanessa Cardui Twin of Eyeless in Eye Development
• Ligusticopsis shaniana, a new combination separated from Peucedanum sensu lato (Apiaceae) on the basis of morphological and phylogenetic evidence
• The nuclear pore complex acts as a hub for pri-miRNA transcription and processing in plants
• Diversity of Niphargus (Crustacea, Amphipoda) in France, as revealed by DNA barcoding approach
• Characterization of the transposable element landscape shaping the Ectocarpus genome
• Molecular phylogeny of Philippine Amorphophallus (Araceae): evidence of polyphyly and multiple colonization events
• New additions to Sympoventuriaceae (Venturiales, Dothideomycetes): three new species from China
• The phylogenetic affinities of Chaetognathifera, with considerations of systematic error and the robusticity of macrosyntenic results
• Coding complete genome of LPAI H16N3 virus from Australia suggests intercontinental movement
• Tracing the Drivers of Range‐Wide Bowhead Whale Genomic Structure and Diversity
• Mitogenomic sequencing of the Brazilian Mastiff and Brazilian Terrier suggests a complex scenario of breed formation for two established Brazilian dog breeds
• Two new species and four new host records of Fusarium species (Nectriaceae, Hypocreales) associated with Semanotus bifasciatus causing Taxodium hybrid ‘Zhongshanshan’ dieback
• Two new species of Sugitazyma (Trimorphomycetaceae, Tremellales) from China: S. polliae and S. pingtangensis
• Morphology and multi-locus phylogeny reveal 23 fungal taxa from terrestrial habitats
• Species delimitation based on phylogenetic analyses of males: A case study revealing the complex evolutionary history of giraffes
• Phylogenetic Insights and a New Distribution Map for Chile's Endemic Virilastacus Crayfishes
• Mustura arenaria, a new species of genus Mustura (Cypriniformes, Nemacheilidae) from Myanmar, with taxonomic notes on Mustura shanensis
• Phylotranscriptomics Allows Distinguishing Major Gene Flow Events from Incomplete Lineage Sorting in Rapidly Diversifying Mimetic Orchids (Genus Ophrys )
• Two new species of the Spinomantis bertini species complex (Mantellidae) from south-eastern Madagascar
• Morphological and phylogenetic analyses reveal two new species of Niesslia (Niessliaceae, Hypocreales) from China
• Investigating the antimethanogenic effects of selected nitro-compounds on methane production, rumen fermentation, and methanogenic archaea in vitro
• Morphology and molecular phylogeny of Mayamaea densestriata sp. nov. (Bacillariophyceae), a new terrestrial species from Henan Province, China
• A randomized clinical trial to examine hazelnut skin extract's effects on diarrhea and bronchopneumonia incidence, growth rate, antioxidant status, and fecal microbiota in neonatal dairy heifers
• Pantoea graminicola sp. nov., a Gram-negative bacterium isolated from sweet corn (Zea mays L.) in the USA
• Clematis danxiacola (Ranunculaceae), a new species from the Danxia landform area in Zhejiang Province, China
• Morphological and phylogenetic analysis of the early-diverging lineage of Glomeromycota suggest two new genera and recombinations in Archaeosporales
• New species of Aspergillus in sections Cavernicolarum and Nigri from terrestrial ecosystems of China (Eurotiales, Aspergillaceae)
• Cyberlindnera hibernica sp. nov. and Barnettozyma discipulorum sp. nov., isolated from forest soil in Ireland
• Studies in phylogeny and divergence times of Irpicaceae and Meripilaceae (Polyporales, Basidiomycota), with an emphasis on Ceriporia and Meripilus including ten new species
• Morphological and molecular identification of new species and records of Daldinia (Hypoxylaceae, Xylariales) from Guizhou Province, China
• Ophiostoma babimostense and Sporothrix europaea (Ascomycota, Ophiostomatales), two new ophiostomatalean species, associated with ambrosia and bark beetles in Norway and Poland
• Bioactive eremophilane meroterpenoids produced by the soil fungus Stchigelomyces brunnescens gen. et comb. nov.
• Concomitant COX-1 and COX-2 suppression is not sufficient to induce enteropathy associated with chronic NSAID use
• A virus associated with the zoonotic pathogen Plasmodium knowlesi causing human malaria is a member of a diverse and unclassified viral taxon
• A phylogenetic contribution to understanding the panzootic spread of African swine fever: from the global to the local scale
• Morphology and phylogeny reveal two new species of pestalotioid fungi associated with hawthorn in Northeast China
• Scutellaria cavicola (Lamiaceae), a new cave-dwelling species from Northwest Guangxi, China
• Population immunity predicts evolutionary trajectories of SARS-CoV-2
• The genus Artomyces (Auriscalpiaceae, Basidiomycota) from the Gaoligong Mountains and adjacent areas, southwestern China
• An unidentified species of Leucochloridium (Trematoda: Leucochloridiidae) found in an Amber snail (Succinea lauta) from Chiba Prefecture, Honshu, Japan
• Sinosenecio yaanensis (Asteraceae, Senecioneae), a new species from western Sichuan, China
• BBX transcription factor evolution in the green plant lineage
• Two new and one new morph record of Calycina (Pezizellaceae, Helotiales) species from Southwestern China
• Bioprospecting of Chilean Labyrinthulomycetes: Laboratory Evaluation of PUFA and Carotenoid Production in Isolates From Diverse Natural Environments
• Morphological and phylogenetic analyses reveal two new species of Tubeufia (Tubeufiales, Tubeufiaceae) from freshwater habitats in China
• Evolutionary dynamics in the genome of ocular Chlamydia trachomatis strains from Northern Tanzania following mass drug administration
• Unraveling nitrogen uptake and metabolism: gene families, expression dynamics and functional insights in aspen ( Populus tremula )
• Towards a better knowledge and conservation of cryptic macrolichens in Italy: a revision of the genus Cetrelia (Parmeliaceae, Lecanorales, lichenized Ascomycota)
• Chlamydia vaughanii sp. nov., a novel Chlamydia isolated from a tropical fish (bushymouth catfish)
• Ancient DNA and morphometrics reveal a new species of extinct insular shelduck from Rēkohu Chatham Islands
• Deciphering phenylalanine-derived salicylic acid biosynthesis in plants
• Three-step biosynthesis of salicylic acid from benzoyl-CoA in plants
• Efficient assembly of plant genomes: A case study with evolutionary implications in Ranunculus (Ranunculaceae)
• An integrative taxonomic approach reveals exceptional species diversity of Burmoniscus from China (Crustacea: Isopoda: Oniscidea)
• Fine-scale population structure of Japanese Helicobacter pylori provides new anthropological and epidemiological insights
• Diverse toxin repertoire but limited metabolic capacities inferred from the draft genome assemblies of three Spiroplasma (Citri clade) strains associated with Drosophila
• Genetic isolation of an amphidromous goby species, Luciogobius ryukyuensis, highlights limited gene flow in small island populations
• Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia
• First detection of Sindbis virus in wild birds in Nigeria
• From data to discovery: leveraging big data in plant natural products biosynthesis research
• Systematics and evolution of the New Caledonian endemic genus Cazeresia (Coleoptera: Chrysomelidae, Eumolpinae)
• An alternative pathway to starch granule initiation unraveled in Chlamydomonas reinhardtii
• Origin and Evolution of Bacterial Periplasmic Force Transducers
• Environmental microbiomes drive chemotactile sensation in octopus
• Detection and spread of high pathogenicity avian influenza virus H5N1 in the Antarctic Region
• Three new species of Sanguinoderma (Ganodermataceae, Basidiomycota) from Southwest China revealed by morphology and phylogenetic analysis
• Rubus semiplenus (Rosaceae), a new species with naturally occurring semi-double flowers from Hunan, China
• Independent transitions to fully planktonic life cycles shaped the global distribution of medusozoans in the epipelagic zone
• Investigation of post-vaccinal canine distemper involving the Rockborn-like strain in nine puppies in New Zealand
• Morpho-phylogenetic evidence reveals novel Bambusicolous fungi from Guizhou Province, China
• Species diversity of Pseudoplagiostoma and Pyrispora (Diaporthales) from Fagaceae hosts in China
• Large Inversions Shape Diversification and Genome Evolution in Common Quails
• The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
• Blue Turns to Gray: Paleogenomic Insights into the Evolutionary History and Extinction of the Blue Antelope ( Hippotragus leucophaeus )
• Morphological and molecular evidence support the synonymy of Mainwaringia dantaae and Mainwaringia leithii
• There and back again: historical biogeography of neotropical magnolias based on high-throughput sequencing
• Viral Nervous Necrosis due to Betanodavirus: A Case Study in Pot‐Bellied Seahorses (Hippocampus abdominals)
• Re-description, systematics and complete mitochondrial genome of Philhelius coreanus (Shiraki, 1930) (Diptera, Syrphidae) in the Republic of Korea
• Diving into Diversity: Haslea berepwari (Bacillariophyceae, Naviculaceae), a new species of marine diatom from New Caledonia
• New fungal genus, three novel species and one new record from mangroves, with reclassification of Melanconiella (Melanconiellaceae) species
• Characterization of shell field populations in gastropods and their autonomous specification mechanism independent of inter-quartet interactions
• Biogeographic Implications of Biodiversity Shortfalls in a Mid‐Altitude Desert Ecotone of the Arabian Peninsula
• Environmental Factors and Pollution Stresses Select Bacterial Populations in Association With Protists
• Insights into longhorn beetle (Cerambycidae) evolution from comparative analyses of the red-headed ash borer (Neoclytus acuminatus acuminatus) genome
• Unveiling new species of Phragmidiaceae (Basidiomycota, Pucciniales) on rosaceous plants from Guizhou, China
• Automatic identification and annotation of MYB gene family members in plants
• A new species of Sedum (Crassulaceae) from eastern China based on morphological and molecular evidence
• Three new species of Dicephalospora (Leotiomycetes, Helotiales) from Northern Thailand and Southwestern China
• Hematophagy Generates a Convergent Genomic Signature in Mosquitoes and Sandflies
• Chelonopsis guchengensis, a new species of Lamiaceae from Hubei Province in Central China
• Promethearchaeum syntrophicum gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage ‘Asgard’ archaea, and proposal of the new archaeal phylum Promethearchaeota phyl. nov. and kingdom Promethearchaeati regn. nov.
• Rorippa daguanensis (Brassicaceae), a new species from eastern China
• Early pandemic HIV-1 integration site preferences differ across anatomical reservoirs
• Characterisation and comparative analysis of mitochondrial genomes of false, yellow, black and blushing morels provide insights on their structure and evolution
• Genomics, Population Divergence, and Historical Demography of the World's Largest and Endangered Butterfly, The Queen Alexandra's Birdwing
• Lijiangomyces laojunensis gen. et sp. nov. (Mytilinidiaceae), and Sclerococcum stictae (Dactylosporaceae), a new lichenicolous species from Yunnan, China
• The mitochondrial genome of the deep-sea pyramid urchin Echinocrepis rostrata (Echinoidea: Holasteroida: Pourtalesiidae)
• Phylogeny and phenotype of Filobasidium revealing three new species (Filobasidiaceae, Filobasidiales) from China
• Four new species of Pichia (Pichiales, Pichiaceae) isolated from China
• ATL_FISHREF: A 12S mitochondrial reference dataset for metabarcoding Atlantic fishes frequently caught during scientific surveys in the Bay of Biscay
• Characterisation of Marteilia cocosarum in the Wash Estuary, UK, linked to mass mortalities of cockles ( Cerastoderma edule ), and its relationship to closely related species
• Damsels in Disguise: Development of Ultraviolet Sensitivity and Colour Patterns in Damselfishes (Pomacentridae)
• Microbial hauberks: composition and function of surface layer proteins in gammaproteobacterial methanotrophs
• Sustained virologic suppression of multidrug-resistant HIV in an individual treated with anti-CD4 domain 1 antibody and lenacapavir
• Identification of three novel species and one new record of Kirschsteiniothelia (Kirschsteiniotheliaceae, Kirschsteiniotheliales) from Jiangxi, China
• Novel adaptive immune systems in pristine Antarctic soils
• Identification and characterization of a ubiquitin E3 RING ligase of the Chlamydia -like bacterium Simkania negevensis
• Nanopore sequencing with unique molecular identifiers enables accurate mutation analysis and haplotyping in the complex lipoprotein(a) KIV-2 VNTR
• The world’s most venomous spider is a species complex: systematics of the Sydney funnel-web spider (Atracidae: Atrax robustus)
• Primulina xingyiensis (Gesneriaceae), a new species in the karst landforms of Guizhou Province, China
• Traits associated with the conservation gradient are the strongest predictors of early‐stage fine root decomposition rates
• Microtoena wawushanensis (Lamiaceae, Lamioideae): A new species from Sichuan, China
• Nectonema horsehair worms (Nematomorpha) parasitic in the Tanner crab Chionoecetes bairdi, with a note on the relationship between host and parasite phylogeny
• Isopods on isopods: integrative taxonomy of Cabiropidae (Isopoda: Epicaridea: Cryptoniscoidea) parasitic on anthuroid isopods, with descriptions of a new genus and three new species from Japan
• Genomic changes are varied across congeneric species pairs of animals
• When paleontology meets genomics: complete mitochondrial genomes of two saber-toothed cats’ species (Felidae: Machairodontinae)
• Intraspecific variation in Gyrodactylus mediotorus and G. crysoleucas (Gyrodactylidae) from Nearctic shiners (Leuciscidae): evidence for ongoing speciation, host-switching, and parasite translocation
• Essential gene acquisition destabilizes plasmid inheritance
• A tale of long tails: Evolution of host specialization in non‐pollinating fig wasps
• Phylogenetic and taxonomic studies of six recently-described Stellaria species (Caryophyllaceae) from China, with an additional new species, Stellaria longipedicellata, from Sichuan
• Epidemiological data of an influenza A/H5N1 outbreak in elephant seals in Argentina indicates mammal-to-mammal transmission
• Structure of an Archaeal Ribosome with a Divergent Active Site
• Targeted DNA ADP-ribosylation triggers templated repair in bacteria and base mutagenesis in eukaryotes
• Tenkana, a new genus of jumping spiders (Salticidae, Plexippina) from South Asia, with the new Indian species Tenkana jayamangali
• A Morpho-molecular Perspective on the Diversity and Evolution of Spumellaria (Radiolaria)
• Expansion, restructuring and characterization of the Legionellaceae family
• Transposition with Tn3-family elements occurs through interaction with the host β-sliding clamp processivity factor
• Plastid genome evolution in leafless members of the orchid subfamily Orchidoideae, with a focus on Degranvillea dermaptera
• The formation of the Indo-Pacific montane avifauna
• Morphological and genetic evidence suggest gene flow among native and naturalized mint species
• A lamprey neural cell type atlas illuminates the origins of the vertebrate brain
• Gene transfer among viruses substantially contributes to gene gain of giant viruses
• Relicts in the mist: Two new frog families, genera and species highlight the role of Pantepui as a biodiversity museum throughout the Cenozoic
• Predicting multiple conformations via sequence clustering and AlphaFold2
• Pithoviruses Are Invaded by Repeats That Contribute to Their Evolution and Divergence from Cedratviruses
• Mathematics Experience and Format-specific Effects in Numerical Cognition
• Jorvik: A membrane-containing phage that will likely found a new family within Vinavirales
• Phylogenomics of the ecdysteroid kinase-like (EcKL) gene family in insects highlights roles in both steroid hormone metabolism and detoxification
• Revisiting Algorithms, Tools, and Applications for Sequence and Phylogenetic Analyses in the NGS-Based Omics Era
• Isolation and characterization of a clade 2.3.4.4b genotype D1.1 H5N1 virus from dairy cattle in Wisconsin
• Prevalence and Molecular Characterisation of Cryptosporidium spp. and Giardia duodenalis in Equines in Algeria
• Characterization of Alternaria Isolates from Brazilian Citrus Orchards by Fungicide Resistance Phenotype and Species
• Evolutionary history of Jamestown Canyon virus reveals complex multi-vector ecology
• Insertion of an invading retrovirus regulates a novel color trait in swordtail fish
• Characterization of Pestalotiopsis Species Causing Black Leaf Spot on Italian Ryegrass in Southwestern China
• A GRAS transcription factor regulates far-red light responses via gibberellin-related compounds in Marchantia polymorpha
• Complete mitochondrial sequencing reveals the horizontal transfer and gene rearrangement of Passiflora edulis
• Identification of Fusarium Species Associated with Fusarium Wilt Disease of Strawberry in Zhejiang Province, China
• Whole-genome duplication shaped cell-type evolution in the vertebrate brain
• A DNA barcode reference library of terrestrial and freshwater molluscs of Catalonia, northeastern Iberian Peninsula
• Phylogeography of Terricola Voles in the Caucasus and Eastern Anatolia, with a New Southernmost Record of Microtus daghestanicus (Rodentia, Cricetidae, Arvicolinae)
• Applications of the Vendi score in genomic epidemiology
• Multiple molecular data provide new insights into phylogeny and historical biogeography of East Asian Artemisia L. (Asteraceae)
• Emendation of morphology and infrageneric standards of Parasola (Psathyrellaceae, Agaricales) and its species diversity in China
• Direct activation of a bacterial innate immune system by a viral capsid protein
• Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms
• Resolving the Stasis-Dynamism Paradox: Genome Evolution in Tree Ferns
• Co‐phylogenetic constraints on host breadth within an emerging fungal pathogen complex of global concern
• Two new arthroconidial yeast species from bark and pit mud in China
• Taxonomy in the light of incongruence: An updated classification of Malvales and Malvaceae based on phylogenomic data
• Too Far From Relatives? Impact of the Genetic Distance on the Success of Exon Capture in Phylogenomics
• New species and records of Phaeobotryon (Botryosphaeriales, Botryosphaeriaceae) from Larix in China
• HBV shows different levels of adaptation to HLA class I-associated selection pressure correlating with markers of replication
• First record of the Mediterranean mussel Mytilus galloprovincialis (Bivalvia, Mytilidae) in Brazil
• Protein-templated synthesis of dinucleotide repeat DNA by an antiphage reverse transcriptase
• Morphological and genetic evidence for the Sarcaulus brasiliensis complex (Sapotaceae, Chyrsophylloideae) reveals a new species from the rainforests of the Middle Magdalena Valley, Colombia
• Coordinated transcriptional response to environmental stress by a Synechococcus virus
• Comparative Genomics Provide Insight Into the Evolution of European Aphanomyces euteiches Strains
• Revisiting Acalypha medicinal interest: ethnobotany, experimental studies, and the implications of taxonomic misuse pitfalls
• Cretaceous and Paleocene fossils reveal an extinct higher clade within Cornales, the dogwood order
• Monkeypox virus emergence in wild chimpanzees reveals distinct clinical outcomes and viral diversity
• HAPP: High-accuracy pipeline for processing deep metabarcoding data
• Antibiosis, Endophytic Colonization, and Efficacy of Trichoderma Against the Laurel Wilt Pathogen in Avocado
• A Population Genomics Approach to Understand the Diversity, Migration, and Reproduction of the Rice Pathogen Cercospora janseana
• Bacteriophages mobilize bacterial defense systems via lateral transduction
• Tales of the unexpected II: two new angiocarpic representatives of Russulaceae (Russulales, Basidiomycota) from tropical Southeast Asia
• Phylogeny and taxonomy of Iris (Iridaceae) series Tenuifoliae: Discovery of a clade with chloroplast genome inversion and description of three new species
• Unveiling cryptic diversity: two new species of Dugesia from northern China, including one sibling species (Platyhelminthes, Tricladida, Dugesiidae)
• Anemochory and population structure of the aquatic microinvertebrate Euchlanis chihuahuaensis in the Chihuahuan Desert
• Tribolium madens satellitome reveals a network of highly abundant satellite DNAs in megabase-sized regions hallmarked by macro-dyad symmetries
• Metagenomic expansion of Joyebacterota identifies Cavimicrobium , a dominant sulfide-producing lineage in anoxic marine ecosystems
• Host–anellovirus interactions in an island ecosystem: non-human primates and rodents in Madagascar harbour diverse, rich anellovirus populations
• Mycoheterotrophy and plastid genome evolution in the early-diverging epidendroid orchid tribe Nervilieae: independent transitions in Epipogium and Stereosandra
• Migration of Brown-headed Gulls on the Qinghai-Tibet Plateau: Potential transmission routes for highly pathogenic H5Nx virus
• Novel 20th century rotavirus alphagastroenteritidis strains identified in formalin-fixed and ethanol-preserved museum specimens
• Beet Curly Top Virus Genetic Diversity, Impact on Cannabinoids, Potential Seed Transmission, and Vector Biology in Hemp
• Phylogenetic relationships and critical taxonomic notes on the genus Astragalus (Fabaceae) in Kazakhstan (Central Asia): Part I
• Conspecific Scaffold‐Level Genome Assembly Outperforms Heterospecific Chromosome‐Level Assemblies for Assessing Genetic Indicators in a Threatened Marine Fish
• Pogostemon puerensis (Lamiaceae), a new species from Yunnan of China
• Ultraconserved elements, DNA barcoding and morphology unravel the diversity and evolution of the Hypoponera pruinosa group (Hymenoptera: Formicidae) in Indochina and the Indo-Australian region
• Egg Yolk Protein Homologs Identified in Live-Bearing Sharks: Co-Opted in the Lecithotrophy-to-Matrotrophy Shift?
• The telomere-to-telomere (T2T) genome of Peucedanum praeruptorum Dunn provides insights into the genome evolution and coumarin biosynthesis
• Living on the Rocks: Genomic Analysis of Limestone Langurs Provides Novel Insights into the Adaptive Evolution in Extreme Karst Environments
• Stagonosporopsis citrulli : The Causal Agent of Gummy Stem Blight on Luffa acutangula and Momordica charantia in Guangdong Province of China
• Unravelling the cryptic diversity of the low-dispersal land planarian Cephaloflexa bergi to elucidate diversification processes in the Brazilian Atlantic Forest
• Two novel species of sooty mould fungi (Capnodiales, Dothideomycetes) from China
• Evidence of Phylosymbiosis in the Microbiome of Conifer Roots
• Molecular phylogeny of Catenulida (Platyhelminthes) with special focus on their diversity in Poland
• When cells rebel: a comparative genomics investigation into marsupial cancer susceptibility
• Fungal Community Profiling and Pathogen Detection in Conifer Seed Lots: Benchmarking Oxford Nanopore DNA Metabarcoding Against Conventional Methods
• Camellia shangshii (Theaceae), a new species endemic to danxia landscape from Guangdong Province, China
• Plio‐Pleistocene Environmental Changes Drove the Settlement of Aotearoa New Zealand by Australian Open‐Habitat Bird Lineages
• A phylogenomic approach, combined with morphological characters gleaned via machine learning, uncovers the hybrid origin and biogeographic diversification of the plum genus
• Origin and Evolution of Key Enzymes in the Anammox Pathway Revisited
• Resurrected nitrogenases recapitulate canonical N-isotope biosignatures over two billion years
• Impatiens tainingensis (Balsaminaceae), a new species from southeastern China
• An archaeal genetic code with all TAG codons as pyrrolysine
• A novel glutathione transferase harboring an FMN redox cofactor
• Microendemism can be the rule in the Brazilian Caatinga: evidence from flat lizards of the Tropidurus semitaeniatus group (Squamata: Tropiduridae)
• Disordered N‐termini enhance the thermostability of SGNH ‐hydrolase family polyesterases
• Unveiling the Genetic Structure and Ecological Niche Diversification of the Stingless Bee Tetragonisca angustula (Meliponini) in Peruvian Amazon
• Hidden genetic diversity among Blochmanniella endosymbionts of closely related carpenter ant populations
• Loss of mitochondrial single stranded DNA-binding protein (mtSSB) gene is associated with mitochondrial genome fragmentation in Psocodea (bark lice, book lice, and parasitic lice)
• A Phylogenomic Framework of Gastrotricha Evolutionary Relationships
• Phylogenomic Analysis of Deep-Branching Telonemid
• De novo assembled nuclear, chloroplast, and mitochondrial genomes show high intraspecific variation in the tropical rainforest species Symphonia globulifera
• Metagenomics Study of the Commercial Tomato Virome Focused on Virus Species of Epidemiological Interest
• Estimation of genome-wide coupling in rattlesnake hybrids provides insight into the process of speciation and its progress
• Ecology and spread of the North American H5N1 epizootic
• Barley Rhizosphere Bacteriome Dynamics under Organic and Mineral Inputs: The importance of intercropping predecessor
• Four new species of Trichoderma (Hypocreaceae, Hypocreales) discovered in the staple food bamboo of pandas
• Geospatial and phylogenetic clustering of acute and recent HIV infections in Lilongwe, Malawi
• Evolution of Mutator transposons in the genomes of worms
• Changes in flexibility but not in compactness underlie the thermal adaptation of prokaryotic adenylate kinases
• Physalia mikazuki sp. nov. (Phylum Cnidaria; class Hydrozoa) blown into Japan’s northeast (Tohoku) at the whim of marine ecosystem change
• Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis
• Functional and Structural Determinants of Long- and Short-Term Evolution of Herpesvirus Proteins
• De novo genome Assembly of Rauvolfia Serpentina and comparative paleodemographic analysis of Apocynaceae plants
• Revised evolutionary relationships within Brachycera and the early origin of bicoid in flies
• Evolution of homologous recombination rates across bacteria
• Grass fly evolution unlocked: phylogenomics and classification of worldwide Chloropidae (Diptera)
• From Binding to Catalysis: Emergence of a Rudimentary Enzyme Conferring Intrinsic Antibiotic Resistance
• No need to replace an “anomalous” primate (Primates) with an “anomalous” bear (Carnivora, Ursidae)
• A new genus and two new species of Wiesneriomycetaceae (Tubeufiales) from China revealed by molecular phylogeny and taxonomy
• Three novel species of Cladosporium and Sarocladium isolated from palm trees
• Adaptation strategies of iron-oxidizing bacteria Gallionella and Zetaproteobacteria crossing the marine–freshwater barrier
• The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
• Camellia guiliangii (Theaceae), a new yellow-flowered Camellia species from limestone mountains of southern Yunnan, China
• The origin of squamates revealed by a Middle Triassic lizard from the Italian Alps
• Euphorbia fanjingshanensis (Euphorbiaceae), a new species from section Helioscopia in southwestern and central China
• Island hoppers: Integrative taxonomic revision of Hogna wolf spiders (Araneae, Lycosidae) endemic to the Madeira islands with description of a new species
• The origins and potential cross-species transmission of paramyxoviruses and other RNA viruses between native snakes and invasive Burmese pythons in the Florida Everglades
• Ten new species of Inocybe ( Inocybaceae, Agaricales ) from the Gaoligong Mountains, southwestern China
• Comparative analysis of the mobilome yields new insights into its diversity, dynamics and evolution in parasites of the Trypanosomatidae family
• Mollusc genomes reveal variability in patterns of LTR-retrotransposons dynamics
• Are interphylum spiralian relationships resolvable?
• An updated phylogeny of the family Stenasellidae (Crustacea, Isopoda), with a new species of Stenasellus from southern Vietnam
• Comparative phylogeography reveals the Qinling–Daba Mountains as a key dispersal corridor for Oriental–Palaearctic megalopteran species
• Functional Evaluation of a Conserved HNH Endonuclease Gene in Lactococcal Skunavirus Genomes
• Anoxia-adapted cyanobacteria in a marine blue hole
• ScD27.2 gene regulation mechanism during sugarcane tillering and growth
• Targeting redundant gene families: A multiplexed, tissue-specific CRISPR toolbox for Arabidopsis genetic screens
• Conservation profile of the largest Palearctic silverfish and Europe's largest cave-adapted terrestrial insect: Squamatinia algharbica (Zygentoma, Nicoletiidae)
• A new species of fringed Forest Gecko, genus Luperosaurus (Squamata: Gekkonidae), from Sibuyan Island, Central Philippines
• Dictyolimon gilesii (Plumbaginaceae), a new generic record to China, with special reference to its first plastome
• An evolutionary path to altered cofactor specificity in a metalloenzyme
• Exploring the phylogenetic history of water striders (Hemiptera: Heteroptera: Gerromorpha) using genome‐skimming
• Peatland Pond Microbiome and Biogeochemical Responses to Solar Radiation Extremes in a High-Altitude Wetland, Salar de Huasco, Chile
• Puccinia tritici-golanensis, a new wheat leaf rust pathogen from Yonatan region of the Golan Heights, Puccinia tritici-duri and Puccinia triticina typified, and their phylogenetic relationships
• De novo origin of numerous microproteins in enterobacteria
• A new species of Clematis sect. Tubulosae (Ranunculaceae) from Zhejiang, East China
• A fossil-calibrated divergence times and historical biogeography of Zoraptera
• BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
• Dated gene duplications elucidate the evolutionary assembly of eukaryotes
• Taxonomic status of Orophea yunnanensis (Annonaceae), an endemic plant species in Yunnan, China
• Two new Periconia species (Pleosporales, Ascomycota) in China
• Integrative taxonomy reveals the biodiversity of intertidal marine flatworms of the suborder Acotylea (Platyhelminthes: Polycladida) in the South China Sea
• Immunogenicity of a trivalent haemorrhagic fever vaccine candidate against Sudan virus, Marburg virus and Lassa virus in an mpox vaccine
• Gateways to the underworld: molecular phylogenetic analyses identify patterns of groundwater fauna and two new species of hypogean Hyalella Smith, 1874 (Amphipoda, Hyalellidae) from the northern Mojave Desert
• Genomic Assessment of Giraffes in North American Collections Highlights Conservation Challenges
• Two new species of Pestalotiopsis (Amphisphaeriales, Pestalotiopsidaceae) causing needle blight of Pinus massoniana in China
• A new species of Plagiopholis Boulenger, 1893 (Serpentes, Pseudoxenodontidae) from Guangdong, China
• Two new species of Chionosphaera and Kurtzmanomyces (Chionosphaeraceae, Agaricostilbomycetes) isolated from China
• Indosasa fimbriligulata (Poaceae, Bambusoideae), a new bamboo species from Guangxi, China
• A newly-recorded species, Roeslerstammia erxlebella (Fabricius, 1787) (Lepidoptera, Roeslerstammiidae) from Korea, with a key to species of the genus and DNA barcoding analysis
• Rediscovery and molecular phylogenetic placement of the endemic diving beetle Allodessus skottsbergi (Coleoptera: Dytiscidae) in Rano Kau crater of Rapa Nui (Easter Island)
• A new species of Platycampus (Hymenoptera, Tenthredinidae) from China, with an identification key to the world species
• Museum genomics suggests long-term population decline in a putatively extinct bumble bee
• Generic revision on the Biwia– Microphysogobio complex (Cypriniformes, Gobionidae) with descriptions of three new genera
• Morphological and phylogenetic analyses reveal Xenosporidesmiaceae fam. nov, with seven Xenosporidesmium species
• Integrative Phylogenetic and Morphological Analyses Reveal Two New Species of Porcellanid Crabs and Resurrect Porcellanella picta Stimpson, 1858 (Decapoda: Porcellanidae)
• Isolation, characterization, and genetic manipulation of cold-tolerant, manganese-oxidizing Pseudomonas sp. strains
• Evolution and comparative genomics of tick-associated Francisella endosymbionts: insights into metabolic pathways and historical biogeographic patterns
• learnMSA2: deep protein multiple alignments with large language and hidden Markov models
• Sedum shunhuangense (Crassulaceae), a new species from Hunan, China
• A novel method to assess the integrity of frozen archival DNA samples: Alpha‐diversity ratios of short‐ and long‐read 16S rRNA gene sequences
• Additions to Acrocalymmaceae and Didymosphaeriaceae (Pleosporales, Dothideomycetes): Some interesting novel additions from plant litter in China
• Petrocosmea pengzhouensis (Gesneriaceae), a new species from Sichuan Province, China
• Refugial isolation and ecological niche differentiation promote genetic divergence of Oresitrophe and Mukdenia in Northeast Asia
• Coral anthozoan-specific opsins employ a novel chloride counterion for spectral tuning
• Four new species of the lichen genus Diorygma (Graphidaceae, Ostropales) from Guizhou, China
• A new freshwater shrimp species of the genus Caridina (Crustacea, Decapoda, Atyidae) from Quang Ninh province, Northeast Vietnam
• Dissecting multitrophic interactions: The relationships among Entomophthora, their dipteran hosts, and associated bacteria
• Chromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plant
• Comparative genomic analysis of Latilactobacillus sakei strains provides new insights into their association with different niche adaptations
• Population dynamics and evolutionary history of the genus Sakesphorus (Aves: Thamnophilidae) in the Amazonian floodplains
• Estimates of molecular convergence reveal genes with intermediate pleiotropy underlying adaptive variation across teleost fish
• Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate embryo and root development
• The Winners Take It All? Global Evolutionary Success of H5Nx Reassortants in the 2020–2024 Panzootic
• Evolutionary Dynamics of the Proanthocyanidin Biosynthesis Gene LAR
• Metapetrocosmea navicularis, a new species of Gesneriaceae in Vietnam
• Comparative Study of the Twin Arginine Translocase (Tat) System Across Bacterial Species: Insights into Hydrophobic Interactions, Signal Peptide Binding and Protein Translocation Dynamics
• Petrocodon parviflorus (Gesneriaceae), a new species identified by both morphological and molecular evidence from limestone caves in Guangxi, China
• A genome-skimming phylogeny of ctenostome bryozoans
• Impatiens meishanensis (Balsaminaceae), a new species from Sichuan, China
• Legionella sheltonii sp. nov., a novel species isolated on a cruise ship during routine monitoring
• Characterization of the mitochondrial genomes for Ophiostoma ips and related taxa from various geographic origins and related species: large intron-rich genomes and complex intron arrangements
• Biogeography and species diversity of freshwater Savoryellomycetidae ( Sordariomycetes ) fungi
• Spatio-temporal dynamics of Hendra virus in Pteropus bats in Australia reveals high evolutionary diversity linked with spillover
• Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes
• A divide-and-conquer phylogenomic approach based on character supermatrices resolves early steps in the evolution of the Archaea
• Phylogenetic and evolutionary insights from 30 newly-assembled Onygenales Mitochondrial Genomes: co-evolution of introns and HEGs shapes mitogenome size variation
• Towards a monophyletic Cynoglossum: a dated molecular phylogeny and historical biogeography of Cynoglossinae (Boraginaceae)
• CRESSENT: a Bioinformatic Toolkit to Explore and Improve ssDNA Virus Annotation
• Sylvatic Mosquito Viromes in the Cerrado Biome of Minas Gerais, Brazil: Discovery of New Viruses and Implications for Arbovirus Transmission
• Functional and evolutionary insights into chemosensation and specialized herbivory from the genome of the red milkweed beetle, Tetraopes tetrophthalmus (Cerambycidae: Lamiinae)
• Unraveling the mycobiota of Daqu at the species level using metabarcoding of full-length ITS sequences
• Morpho-phylogenetic evidence reveals novel hyphomycetous fungi on medicinal plants in Southwestern China
• Discovering the diversity of Acarosporaceae with pruina in China
• Yeast diversity in traditional fermented foods of ethnic minorities in China, with the descriptions of four new yeast species
• Systematics and historical biogeography of Crunomys and Maxomys (Muridae: Murinae), with the description of a new species from Sulawesi and new genus-level classification
• The evolution of function in the DNA binding domain of the CRP/FNR family
• Chromosome-level reference genome for the medically important Arabian horned viper ( Cerastes gasperettii )
• Human impacts on the distribution and genetic diversity of Eurasian minnows (Phoxinus: Leuciscidae) in the Rhenish Massif
• CactEcoDB: Trait, spatial, environmental, phylogenetic and diversification data for the cactus family
• The genetic basis of replicated bullseye pattern reduction across the Hibiscus trionum complex
• Gene duplication, translocation and molecular evolution of Dmrt1 and related sex-determining genes in anurans
• HVSeeker: a deep-learning-based method for identification of host and viral DNA sequences
• Microaceticoccus formicicus gen. nov., sp. nov., an ammonia-tolerant formate-utilizing bacterium originating from a biogas process
• Two new acremonium-like species, Paragibellulopsis sinensis sp. nov. and Phialoparvum sinense sp. nov. (Sordariomycetes, Ascomycota) from China
• Bacterial peptide deformylase inhibitors induce prophages in competitors
• Fine-tuned terpene synthase gene expression, functional promiscuity, and subcellular localization: implications for the evolution of complex floral volatile bouquet in Caladenia orchids
• Synopsis of the genus Elymus (Poaceae) in Uzbekistan (Middle Asia) with a description of Elymus uzbekistanicus a new species from Turkestan Mts
• What impact do new homologs have on detecting interdomain horizontal gene transfer in eukaryotes? A reassessment of Katz (2015)
• Genomic and Cis ‐Regulatory Basis of a Plastic C 3 ‐C 4 Photosynthesis in Eleocharis Baldwinii
• <i>Aroramyces sinensis</i>, a new ectomycorrhizal species associated with <i>Quercus</i> from subtropical Asia, and a worldwide key to <i>Aroramyces</i> (<i>Hysterangiaceae</i>)
• Where Did the Y Chromosome in the Spiny Rat Go, and How Did It Get There?
• Chromosomal fusions reshape gene expression and environmental responses in Corbicula Clams
• Gag proteins encoded by endogenous retroviruses are required for zebrafish development
• Host use drives convergent evolution in clownfish
• Integrating a phylogenetic framework for mapping biodiversity patterns to set conservation priorities for an oceanic island flora
• Exploring the microbial communities in coastal cenote and their hidden biotechnological potential
• Historic Museum Samples Provide Evidence for a Recent Replacement of Wolbachia Types in European Drosophila melanogaster
• Genome characterization of parsley severe stunt-associated virus in Iran
• Distinct genomic contexts predict gene presence–absence variation in different pathotypes of Magnaporthe oryzae
• ERCnet: Phylogenomic Prediction of Interaction Networks in the Presence of Gene Duplication
• Using artificial intelligence to document the hidden RNA virosphere
• Comprehensive genome analysis of two Cytospora (Cytosporaceae, Diaporthales) species associated with canker disease of spruce: C. piceae and C. piceicola sp. nov.
• Investigating Nosocomial BK Polyomavirus Infections in Pediatric Hematopoietic Stem Cell Transplantation Recipients: Challenges and Prospects
• Palaeoproteomic identification of a whale bone tool from Bronze Age Heiloo, the Netherlands
• High-throughput screening reveals high diversity and widespread distribution of viruses in black soldier flies (Hermetia illucens)
• Population genomics of Vitis pseudoreticulata reveals the genetic basis of fungal resistance in grapevine
• The immunogenetics of sexual parasitism
• Bacilladnaviridae: refined taxonomy and new insights into the biology and evolution of diatom-infecting DNA viruses
• Genomic and transcriptomic analyses of Heteropoda venatoria reveal the expansion of P450 family for starvation resistance in spiders
• Three novel species of Alternaria (Pleosporales, Pleosporaceae) from cereal crops (Poaceae) in China
• Metagenomic insights into taxonomic and functional patterns in shallow coastal and deep subseafloor sediments in the Western Pacific
• Phylogenomics and adaptive evolution of the Colletotrichum gloeosporioides species complex
• The complete mitochondrial genome of the ‘Extinct in the Wild’ Spix’s Macaw (Cyanopsitta spixii)
• Tissue-like multicellular development triggered by mechanical compression in archaea
• Functional diversification of dietary plant small molecules by the gut microbiome
• Integrative structural analysis of NF45–NF90 heterodimers reveals architectural rearrangements and oligomerization on binding dsRNA
• Persistent Gaps and Errors in Reference Databases Impede Ecologically Meaningful Taxonomy Assignments in 18S rRNA Studies: A Case Study of Terrestrial and Marine Nematodes
• Influence of homogenization methods on lichen species detection from environmental DNA metabarcoding
• Phycocyanobilin Binding and Specific Amino Acid Residues Near The Chromophore Contribute To Orange Light Perception By The Dualchrome Phytochrome Region
• Role of public DNA-Seq data in mitogenomics research: A case study on the flying fish family (Beloniformes: Exocoetidae)
• Characterisation of the virome of Culicoides brevitarsis Kieffer (Diptera: Ceratopogonidae), a vector of bluetongue virus in Australia
• Microbial Community Analysis Offers Insight into the Complex Origins of Plant Disease in a Smallholder Farm Context
• Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls
• Amanita saproalba (Amanitaceae), a New Species from Jammu and Kashmir, India
• The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus
• Pternopetalum shunhuangensis (Apiaceae), a new species from Hunan, China
• Parvimonas micra promotes oral squamous cell carcinoma metastasis through TmpC-CKAP4 axis
• IMA GENOME - F20 A draft genome assembly of Agroathelia rolfsii, Ceratobasidium papillatum, Pyrenopeziza brassicae, Neopestalotiopsis macadamiae, Sphaerellopsis filum and genomic resources for Colletotrichum spaethianum and Colletotrichum fructicola
• The rediscovery of Ohwia luteola (Fabaceae, Papilionoideae) after 50 years and comparative analysis of Ohwia species in plastid genome sequence
• Complexity of the lichen symbiosis revealed by metagenome and transcriptome analysis of Xanthoria parietina
• A systematic exploration of bacterial form I rubisco maximal carboxylation rates
• Draft genome of the endemic alpine ground beetle Carabus (Platycarabus) depressus (Coleoptera: Carabidae) from long-read sequencing of a frozen archived specimen
• Animal, fungi, and plant genome sequences harbour different non-canonical splice sites
• A pan-gene catalogue of Asian cultivated rice
• Accelerated mitochondrial evolution and asymmetric fitness of hybrids contribute to the persistence of Helix thessalica in the Helix pomatia range
• Functional trait mismatch between native and introduced bee pollinators servicing a global fruit crop
• Phylogenomics recovers multiple origins of portable case making in caddisflies (Insecta: Trichoptera), nature’s underwater architects
• Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom
• Global genomic epidemiology of bla GES-5 carbapenemase-associated integrons
• Updated systematics of Trichaptum s.l. (Hymenochaetales, Basidiomycota)
• Genomic insights into hybrid zone formation: The role of climate, landscape, and demography in the emergence of a novel hybrid lineage
• Phylogenomics of neglected flagellated protists supports a revised eukaryotic tree of life
• Insect Antimicrobial Peptides as Guardians of Immunity and Beyond: A Review
• Convergent origin and accelerated evolution of vesicle-associated RhoGAP proteins in two unrelated parasitoid wasps
• A Robust Phylogenomic Time Tree for Biotechnologically and Medically Important Fungi in the Genera Aspergillus and Penicillium
• The origin and speciation of orchids
• Systematic revision of the Eyelash Palm-Pitviper Bothriechis schlegelii (Serpentes, Viperidae), with the description of five new species and revalidation of three
• A high-quality chromosomal genome assembly of the sea cucumber Chiridota heheva and its hydrothermal adaptation
• Modularity and diversity of target selectors in Tn7 transposons
• Spotty distributions: Spotted Gar (Lepisosteus oculatus) and Spotted Sucker (Minytrema melanops) range expansion in eastern Lake Erie
• Regulation of Leishmania surface coat proteins by the nuclear protein ESB1
• Integrative description of three new species of Dugesia (Platyhelminthes, Tricladida, Dugesiidae) from Henan Province, central China
• GTRspmix: Capturing Heterogeneity of Exchangeabilities Across Sites to Improve Protein Phylogenetics
• Evolution of a bipolar sexual compatibility system in Marasmius
• The perfect storm in a coastal pond: duckweed, botulism, bird mortalities, and recurrent blooms of Euglena sanguinea
• Prickly pear byproduct (Opuntia spp.) silage inclusion in dairy sheep diet: Effects on chemical, nutritional, and microbiological characteristics of milk and cheese
• Sulfide-oxidizing potential and hypersalinity tolerance strategies in salt-crust covered coastal microbial mats
• Quantitative stable isotope probing (qSIP)-informed metagenomics identifies viruses infecting chemoautotrophs
• Revisiting the taxonomy of Fagopyrum caudatum var. grandiflorum (Polygonaceae) using morphological and molecular data
• Unexpected diversity of Isidoides (Anthozoa: Octocorallia: Isidoidae) revealed by morphology and phylogenomic analysis with descriptions of three new species
• Population Structure of Xanthomonas citri pv. citri in Iran: 1991 to 2022
• Distinguishing Leptothrix and Sphaerotilus genera by an integrated genomic-phenotypic analysis supported by new Leptothrix genomes
• Evolutionary Rate Variation at Predicted PTM Sites Reveals Localized Host-Associated Patterns in Influenza A Virus
• Rapid Population Flux in Bacterial Spot Xanthomonads During a Transition in Dominance Between Two Genotypes in Consecutive Tomato Production Seasons and Identification of a New Species, Xanthomonas oklahomensis sp. nov.
• Phylogenetic analysis of Adephaga (Coleoptera) with extensive taxon sampling reveals unexpected relationships within the hyperdiverse beetle subfamily Harpalinae (Carabidae)
• Ceropegia gengmaensis (Apocynaceae), a new species from Yunnan, China
• Boletina kowarzi Stackelberg, 1943 (Diptera: Mycetophilidae): first Central European record after nearly 150 years from the Bavarian Alps
• Comparative immunogenicity and cross-protection of wild-type and reverse genetics H5N8 (clade 2.3.4.4b) oil-adjuvanted vaccines against circulating H5N1 avian influenza viruses from clades 2.3.4.4b and 2.2.1.2
• Two new wood-decaying fungi, Resupinatus tropicus and Scopuloides hainanensis (Agaricomycetes, Basidiomycota) from Hainan Province, southern China
• A New Disease of Saccharum officinarum Caused by Heterodera parasacchari n. sp. (Nematoda: Heteroderinae) in China
• Identification, Distribution, and Fungicide Sensitivity of Colletotrichum spp. Causing Peach Anthracnose in South Korea
• Microbacterium songi sp. nov., Microbacterium hanjuni sp. nov. and Microbacterium shimangi sp. nov., three novel salt-tolerant bacteria isolated from plateau voles (Neodon fuscus)
• Detection and Quantification of Potato Spindle Tuber Viroid in Wild and Cultivated Potatoes Using a New Validated RT-qPCR Method
• User Guided Selection and Alignment of Sequence Data by GeneMatrix
• Wastewater-impacted Skagerrak Sea microbiomes anaerobically demethylate micropollutants
• Molecular phylogeny and morphology reveal two new species of Pleurocordyceps luopingensis sp. nov. (Polycephalomycetaceae) and Pseudometarhizium cangyuanense sp. nov. (Clavicipitaceae) from Yunnan, southwestern China
• Hemiboea siccinvolucris (Gesneriaceae), a new species from northeastern Guangxi, China
• From living to fossil: ancestral state reconstruction of leaf architecture in extant Lauraceae and its relevance for the fossil record
• Identification of Cytospora (Cytosporaceae, Diaporthales) species associated with poplar and willow canker diseases in Xizang, China
• Molecular Characterization of H5N1 Clade 2.3.4.4b Virus in Vaccinated Layer Chickens
• Combining nuclear genome, chloroplast fragments and morphology to solve the species delimitation of Aquilegia incurvata (Ranunculaceae)
• Impatiens leshanensis (Balsaminaceae), a new species from Sichuan, China
• A new species of Plagiopholis Boulenger, 1893 (Serpentes, Pseudoxenodontinae) from southeastern Yunnan, China
• Evolutionary and structural bioinformatics identifies GPR89 as a conserved member of the LIMR protein superfamily
• Systematics of Parnassia (Celastraceae) inferred from plastid and nuclear DNA sequence data
• Design and Validation of a Peptide Nucleic Acid Clamp of Barley and Wheat ITS2 for Fungal Microbiome Surveys
• A revision of the Miliusa (Annonaceae) from China
• Miocene climatic fluctuations likely explain the species diversification of Lysionotus (Gesneriaceae) in Pan‐Himalaya
• Complete Chloroplast Genome of the Eria Sensu Lato Complex (Orchidaceae): Comparative Analysis and Phylogenetic Relationship
• Fast and accurate identification of emerging viral reassortment from genome sequences
• Dispersal, adaptation and persistence of H5N1 in the sub-Antarctic and Antarctica
• Two decades (2005 to 2025) of avian influenza research trends, knowledge gaps and distribution of emerging H5N1 2.3.4.4b clade in South Asia
• A comprehensive analysis of the SARS-CoV-2 omicron variant in Tocantins State, Brazil, and tracing the spread of the XBB.1.18.1 lineage
• A new species of Dondersiidae (Mollusca, Solenogastres) associated with a hydroid, with insights into the trophic ecology of Solenogastres
• Species and Distribution of Fusarium Causing Ginseng Root Rot and Antifungal Efficacy of Captan and Hymexazol Against Fusarium spp. in China
• Retracing the Response of Rangifer to Postglacial Climate Change in Arctic Islands
• Phylogenomic insights into the first multicellular streptophyte
• Characteristics of a Dinophysis cf acuminata Population from a Tidewater Glacier Lagoon in a Temperate Latitude: Applications to Dinophysis Studies
• So far but so close: the biogeography of soil and plant-associated fungi in one of the most remote landmasses on Earth
• Four new araneogenous species and a new genus in Hypocreales (Clavicipitaceae, Cordycipitaceae) from the karst region of China
• Retracted and Replaced: Telomere-to-telomere genome and resequencing of 254 individuals reveal evolution, genomic footprints in Asian icefish, Protosalanx chinensis
• Accurate prediction of protein structures and interactions using a three-track neural network
• Not the brightest earthworm in the genus: two non-bioluminescent Avelona (Lumbricidae, Crassiclitellata) with description of a new species
• Variable phylosymbiosis and cophylogeny patterns in wild fish gut microbiota of a large subtropical river
• Genetic diversity and molecular evolution of 3-carboxymuconate cyclase (Gp60–70), the major antigen in pathogenic Sporothrix species
• Taxonomic revision of the Long-tailed Mole (Talpidae: Scaptonyx) with description of a new species from the Gaoligong Mountains
• Exon Capture Museomics Deciphers the Nine-Banded Armadillo Species Complex and Identifies a New Species Endemic to the Guiana Shield
• Allopolyploidization events and immense paleogenome reshuffling underlying the diversification of plants and secondary metabolites in Oleaceae
• Anamorph diversity and species differentiation with shifting of life cycle types in <i>Corollospora</i>, a genus of marine ascomycetes; with an emendation of teleomorph of <i>Varicosporina prolifera</i> and a description of a new anamorphic species
• <i>Endogonales</i> fungi associated with understory herbaceous plants in Japanese temperate forests
• Long genetic and social isolation in Neanderthals before their extinction
• Evolutionary Refinement of Mitochondrial and Plastid Targeting Sequences Coincides with the Late Diversification of Land Plants
• Mitochondrial DNA 16S region and voucher specimen collection of Japanese aquatic Coleoptera and Hemiptera for environmental DNA metabarcoding analyses
• Multiple resampled genomic matrices provide mixed support for arachnid monophyly
• The complete sequence of a human genome
• Noncatalytic functions of ISOAMYLASE 1 and 2 affect the proportion of insoluble and soluble α-polyglucans in maize
• The Early Evolution of Tudor Genes in Holozoa and How Their Distribution Was Influenced by Life History Traits in Metazoa
• Integrative phylogenomics reveals a Permian origin of Adephaga beetles
• Re-shaping the family-level classification of Agaricineae ( Agaricales , Basidiomycota ) using a phylogenomic approach
• ITS phylogeny reveals a wide host range and a high genetic diversity of endophytic <i>Phyllosticta capitalensis</i> in Indonesia
• Phylogenomic Analyses Reveal that Panguiarchaeum Is a Clade of Genome-Reduced Asgard Archaea Within the Njordarchaeia
• A clustering tool for nucleotide sequences using Laplacian Eigenmaps and Gaussian Mixture Models
• Phylogenetic relationships and the identification of allopolyploidy in circumpolar Silene sect. Physolychnis
• The tiniest genomes shrink much further: extreme reductive evolution in planthopper symbionts
• Mitochondrial Impostors: Prevalence and Impacts of NUMTs on Genetic and Evolutionary Studies in Carnivora
• Detection and antibiotic resistance of Salmonella isolates from selected poultry farms in Dar es Salaam, Tanzania
• Biochemical basis of endogenous bioluminescent springtail Lobella sauteri (Collembola)
• The Neotropical ‘polymorphic earless praying mantises’ – Part I: molecular phylogeny and revised higher‐level systematics (Insecta: Mantodea, Acanthopoidea)
• Phylogenomics of Neogastropoda: The Backbone Hidden in the Bush
• But the Clock, Tick-Tock: An Empirical Case Study Highlights the Preeminence of Relaxed Clock Models in Total-Evidence Dating
• Diverse biofilm-forming Sphingomonadaceae represent twelve novel species isolated from glaciers on the Tibetan Plateau
• Non-canonical DNA in human and other ape telomere-to-telomere genomes
• Genomic-based taxonomic classification of the order Sphingomonadales
• Backbone phylogeny and evolution of Lycosidae (Araneae): New insights from phylogenomic analyses of mitogenomic data
• Recurrent Evolutionary Innovations in Rodent and Primate Schlafen Genes
• A monograph of Afrotropical and Mediterranean Derelomus Schoenherr, 1825 (Coleoptera: Curculionidae) with the descriptions of 14 new species
• Owlflies are derived antlions: anchored phylogenomics supports a new phylogeny and classification of Myrmeleontidae (Neuroptera)
• Two new species of Meliola (Meliolales, Sordariomycetes) from Guizhou Province, China
• Genomics Sheds New Light on the Ancestral Bilaterian Opsin Repertoire and Suggests Rhabdomeric Phototransduction in Xenacoelomorpha
• Photosynthetic acclimation is a key contributor to exponential growth of a desert plant in Death Valley summer
• Root-associated ectomycorrhizal fungal communities in and around aggregated retention patches left in logged areas of <i>Abies sachalinensis</i> planted forests
• When did the ancestor of true bugs become stinky? Disentangling the phylogenomics of Hemiptera–Heteroptera
• Plastid genome variation with phylogenetic implications for the Helichrysum-Anaphalis-Pseudognaphalium (HAP) of the tribe Gnaphalieae (Asteraceae)
• Clarifying the Relationships between Microsporidia and Cryptomycota
• CLAE: A High‐Fidelity Nanopore Sequencing Strategy for Read‐Level Viral Variant Detection and Environmental RNA Virus Discovery
• Phylogenomic insights into the relationship and the evolutionary history of planthoppers (Insecta: Hemiptera: Fulgoromorpha)
• Adesmia ephedroides (Fabaceae, Faboideae), a new species from the Mediterranean-type ecosystem of Valparaíso Region, Chile
• Differential expression of flavonoid biosynthetic pathway genes drives the production of transgressive pigments in Nicotiana section Repandae allotetraploids
• Phylogenetic relationships in Chinese oaks (Fagaceae, Quercus): Evidence from plastid genome using low-coverage whole genome sequencing
• Explaining extreme differences in species richness among co-occurring palm clades in Madagascar
• Going deep: phylogenomic analyses incorporating museomic data reveal divergence and character evolution in Decapodiformes (Mollusca: Cephalopoda)
• Digging into the evolutionary history of the fungus-growing-ant symbiont, Escovopsis (Hypocreaceae)
• The virulence regulator CovR boosts CRISPR-Cas9 immunity in Group B Streptococcus
• Structural effects of point mutations in proteins
• Hidden in plain sight: a new species of Habenaria (Orchidaceae) from the Espinhaço range in Minas Gerais, Brazil, plus an updated checklist of the genus from Grão Mogol
• Diversity and spread of cytoplasmic incompatibility genes among maternally inherited symbionts
• Utilizing target capture sequencing to resolve the speciation history of Echinacea (Asteraceae)
• Morpho-phylogenetic analyses of two novel edible mushrooms from China and a mini review of Lyophyllum (Agaricales, Lyophyllaceae) cultivation and bioactivities
• MITE Annotation and Landscape in 207 Plant Genomes Reveal Their Evolutionary Dynamics and Functional Roles
• Lysimachia nanshanensis (Primulaceae), a new species from southwest Hunan, China
• Evolution and classification of hornworts: new insights from the first plastome‐based phylogeny
• Lost in translation: What we have learned from attributes that do not translate from Arabidopsis to other plants
• Large-Scale Bioinformatical Analysis of Host Factors Commonly Induced by Phytophthora Infection
• The Diverging Routes of BORIS and CTCF: An Interactomic and Phylogenomic Analysis
• Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
• Evolutionary History and Ecology of Andrena ( Foveoandrena ) androfovea : A New Nearctic Mining Bee (Hymenoptera, Andrenidae) Species and Subgenus
• Re-assignment of Gongrosira leptotricha, a newly-recorded species in China, to Stephanosphaerinia clade (Chlamydomonadales, Chlorophyceae): insights from morphological and phylogenetic analyses
• The mitogenome of the Northern Hemisphere native terrestrial flatworm Rhynchodemus sylvaticus (Leidy, 1851) (Platyhelminthes, Geoplanidae)
• Population structure and gene flux of Listeria monocytogenes ST121 reveal prophages as a candidate driver of adaptation and persistence in food production environments
• Population genetic structure in three sympatric Ficus species associated with copollinator
• Inherited chromosomally integrated human herpesvirus 6: regional variation in prevalence, association with angina, and identification of ancestral viral lineages in two large UK studies
• Phylogenetic reconstruction of Didymocarpus and related genera in Gesneriaceae with establishment of two new genera
• A novel gyrovirus is abundant in yellow-eyed penguin (Megadyptes antipodes) chicks with a fatal respiratory disease
• An inordinate fondness for Zalmoxis: explosive evolution of Zalmoxidae (Arachnida, Opiliones) goes undetected in Kanaky | New Caledonia
• Taxonomic and distributional revision of Pareas boulengeri (Reptilia, Squamata, Pareidae), including two new species from eastern and central China
• New Iflavirus identified in Chiroxiphia pareola birds from an ecotone area in northeast Brazil
• Evolutionary history of soil-feeding Neotropical termites reveals recent divergences linked to geologic-climatic influences
• Repeated emergence of giant microRNA hairpins across invertebrates
• Automatic identification and annotation of MYB gene family members in plants
• Ribosome-inactivation by a class of widely distributed C-tail anchored membrane proteins
• Convergent evolution of plant prickles by repeated gene co-option over deep time
• Two new species and one asexual morph record of Paraisaria (Ophiocordycipitaceae, Hypocreales) from China
• Kuafuorterviruses, a novel major lineage of reverse-transcribing viruses
• Soil type and precipitation level have a greater influence on fungal than bacterial diversity in serpentine and non‐serpentine biological soil crusts
• First report ofPhyllosticta citricarpaand description of two new species,P. paracapitalensisandP. paracitricarpa, from citrus in Europe
• Three new species of Agaricus (Agaricaceae, Agaricales) from southern China
• Skimming genomes for systematics and DNA barcodes of corals
• Vibrio pectenicida strain FHCF-3 is a causative agent of sea star wasting disease
• A global survey of prokaryotic genomes reveals the eco-evolutionary pressures driving horizontal gene transfer
• Adaptive radiation and social evolution of the ants
• A contribution to the knowledge of the genus Thyreus Panzer in the West and Central Palaearctic (Hymenoptera, Apidae), with two new species, taxonomic updates, host relationships, and a key to European species
• PyNCBIminer: A platform for assembling phylogenetic data sets via GenBank datamining
• Selection Maintains Photosynthesis in a Symbiotic Cyanobacterium Despite Redundancy With its Fern Host
• NUMTsearcher: Advancing detection and evolutionary insights of nuclear mitochondrial DNA segments across human, rabbit, and fish genomes
• Inbreeding does not reduce major histocompatibility complex diversity in the banded mongoose
• High genetic diversity and lack of structure underlie the invasion history of the non-indigenous oyster Dendostrea cf. crenulifera (Mollusca, Ostreida, Ostreidae) spreading in the eastern Mediterranean Sea
• Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles ( C erambycidae)
• Resolving the psyllid tree of life: phylogenomic analyses of the superfamily Psylloidea (Hemiptera)
• From seagrass roots to saline soils: discovery of two new genera in Lulworthiales (Sordariomycetes) from osmotically stressed habitats
• A comprehensive molecular phylogeny of tiger beetles (Coleoptera, Carabidae, Cicindelinae)
• Hitchhiking into the future on a fly: Toward a better understanding of phoresy and avian louse evolution (Phthiraptera) by screening bird carcasses for phoretic lice on hippoboscid flies (Diptera)
• Phylogeny and biogeography of the sharpshooters (Hemiptera: Cicadellidae: Cicadellinae)
• A shallow‐scale phylogenomics approach reveals repeated patterns of diversification among sympatric lineages of cryptic Neotropical aquatic beetles (Coleoptera: Noteridae)
• Large‐scale molecular phylogeny of Cryptorhynchinae (Coleoptera, Curculionidae) from multiple genes suggests American origin and later Australian radiation
• Diversification in Caucasian Epeorus ( Caucasiron ) mayflies (Ephemeroptera: Heptageniidae) follows topographic deformation along the Greater Caucasus range
• Ponto-Caspian amphipods (Crustacea, Amphipoda) and their microsporidian parasites recently established in Sweden
• The role of deep hybridization in fern speciation: Examples from the Thelypteridaceae
• The inbred newt genome unveils molecular mechanisms of behavior, development, and regeneration in urodele amphibians
• Diversity and structure of the deep-sea sponge microbiome in the equatorial Atlantic Ocean
• Hybrid capture resolves the phylogeny of Tetradium (Rutaceae) and supports the inclusion of a species from Sulawesi
• High-quality Lindera megaphylla genome analysis provides insights into genome evolution and allows for the exploration of genes involved in terpenoid biosynthesis
• Variation in Genome Architecture and Epigenetic Modification Across the Microsporidia Phylogeny
• A comparison of two universal angiosperm bait sets and the phylogenomics of Alismatales
• A comprehensive epidemiological approach documenting an outbreak of H5N1 highly pathogenic avian influenza virus clade 2.3.4.4b among gulls, terns, and harbor seals in the Northeastern Pacific
• Novel gene arrangement in the mitochondrial genome of Aspersentis megarhynchus (Acanthocephala, Echinorhynchida, Heteracanthocephalidae), and its phylogenetic implications
• Cyphocarpus perennis (Asterales, Campanulaceae, Cyphocarpoideae), a new species endemic to the Andes of the Atacama Desert, Chile
• Plastomic studies inform the mechanisms of edaphic adaptation in North American species in the tribe Thelypodieae (Brassicaceae)
• Dryopteris pycnolepis, a new fern species from northern Vietnam, with miscellaneous notes on Dryopteris sect. Splendentes (Dryopteridaceae)
• WaveSeekerNet: accurate prediction of influenza A virus subtypes and host source using attention-based deep learning
• Phylogenetic Resolution and Conflict in the Species-Rich Flowering Plant Family Leguminosae
• The phylogeny and systematics of the Costellariidae (Caenogastropoda: Turbinelloidea) revisited
• Integrative morphological, mitogenomic and phylogenetic analyses reveal new vent-dwelling scallop species
• Discordance Down Under: Combining Phylogenomics and Fungal Symbioses to Detangle Difficult Nodes in a Diverse Tribe of Australian Terrestrial Orchids
• Reinstatement of Sabdariffa and new combinations to support a monophyletic concept of Hibiscus (Malvaceae: Hibisceae)
• Mitogenomic analysis reveals two cryptic lineages and provides insights into the historical biogeography of the genus Pseudohynobius (Caudata, Hynobiidae)
• Four new species of Marasmius subgenus Globulares (Marasmiaceae, Agaricales) from subtropical regions of China
• Phylogenomics and the evolutionary history of the Oxyurida (pinworms)
• Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets
• A new Dichocarpum W.T.Wang &amp; P.K.Hsiao (Ranunculaceae) species from Guizhou, China
• CAKR: Commutative algebra k-mer representations for genomics
• Clonal longevity and the enigmatic flowering of woody bamboos are associated with rates of protein evolution
• A new species of the genus Plagiostomum (Platyhelminthes, Prolecithophora, Plagiostomidae), with description of its reproductive and developmental characteristics
• Evidence linking life‐form to a major shift in diversification rate in Crassula
• A new revision of the lichen genus Pleopsidium (Acarosporales, Acarosporaceae) in China reveals two new species
• Unlocking the full potential of Oxford Nanopore reads with NOVOLoci
• A new subgenome of the Camelina genus reveals genome dominance is controlled by chromosomal proximity
• Development of visible light‐sensitive human neuropsin ( OPN5 ) via single amino acid substitution
• Extensive urine production in euryhaline red stingray for adaptation to hypoosmotic environments
• ECSFinder: optimized prediction of evolutionarily conserved RNA secondary structures from genome sequences
• CONSTANS-LIKE 5 facilitates flower opening and scent biosynthesis in Solanaceae
• Renomaera patricki gen. et sp. nov. (Amphipoda, Hadzioidea, Maeridae) described from the seamount in the western Pacific, with a test of monophyly of Maeridae Krapp-Schickel, 2008
• Evolution of Highly Repetitive Silk Genes in the Luna Moth, Actias luna
• Draft Genome of Entamoeba marina Provides Insights Into the Attenuation of Pathogenicity and Adaptation to the Marine Environment
• A deep-time landscape of plant cis -regulatory sequence evolution
• Evolution and diversity of oxidoreductases involved in redox balance and energy conservation
• Phylogenetic review of the millipede genus Cherokia Chamberlin, 1949 (Polydesmida, Xystodesmidae)
• Phylogenetic position and revised classification of Trichonectria (Hypocreales) and related genera
• The Microflora Danica atlas of Danish environmental microbiomes
• Elevated temperature simulating heatwaves restructures active nitrifying communities and associated viruses in tidal flats and agricultural soils
• Evolutionary History and Diversification of M35 Metalloproteases in Dothideomycetes: A Phylogenomic Overview and Case Study in Corynespora cassiicola
• Morphology, genetic characterization and mitochondrial genome of Gorgorhynchus fistularius sp. nov. (Acanthocephala, Isthmosacanthidae) from the red cornetfish Fistularia petimba (Lacépède, 1803) (Gasterosteiformes, Fistulariidae), with phylomitogenomics of the family Isthmosacanthidae
• An ancient metalloenzyme evolves through metal preference modulation
• Evolutionary history and climate-driven dynamics of transposable elements has shaped genome evolution in the Coffea genus
• A new species of the genus Trimeresurus Lacépède, 1804 (Squamata, Viperidae) from western Sichuan Province, China
• Integrase-On-Demand : bioprospecting integrases for targeted genomic insertion of genetic cargo
• Redescription and systematics of Oligodon ornatus Van Denburgh, 1909, and two enigmatic related species (Squamata, Colubridae)
• Angiopteris weimingii (Marattiaceae): a new endangered fern species from southern Yunnan, China, revealed by morphology and phylogeny
• Multiple protein structure alignment at scale with FoldMason
• A new cave species of the genus Triplophysa (Teleostei, Cypriniformes, Nemacheilidae) from Guizhou, China
• Structural analysis of antigenic variation and adaptive evolution of the H5N1 neuraminidase gene
• Description of a new species of the Asian newt genus Tylototriton Anderson, 1871 (Urodela, Salamandridae) from central China
• Species diversity of Derxomyces (Bulleribasidiaceae, Tremellales) in China, with descriptions of two new species
• Evolutionary remodeling of non-canonical ORF translation in mammals
• Genome-Wide Identification and Expression Analysis of the Nucleotide-Binding Leucine-Rich Repeat Gene Families in Rubber Tree
• Cannabidiol modulates brain molecular alterations, gut microbiota dysbiosis and alcohol self-administration in a mouse model of fetal alcohol spectrum disorder
• Pathobiome Analyses Reveal Structural Changes in Maize Microbiomes Associated with Phyllachora maydis and Tar Spot Disease
• Impatiens ngariensis (Balsaminaceae), a new species from Xizang, China
• Characterization of Didymellaceae Leaf Spot Associated with Elymus Plants in the Tibetan Plateau of China
• Taxonomic position of Eriocycla (Apiaceae): insights from molecular and morphological evidence
• Targeted genome mining with GATOR-GC maps the evolutionary landscape of biosynthetic diversity
• Similar Genetic Routes Are Independently Targeted for Mimetic Color Convergence in Bumble Bees
• Fungal symbiont community and absence of detectable mycangia in invasive Euplatypus ambrosia beetles
• What is Fusarium forma specialis?
• A Deeply Branching Lineage in Heterolobosea (Discoba) With Multiflagellated and Multigrooved Life Stages
• First report of Asian pistachio rust (Pileolaria pistaciae) in Pakistan
• Paphiopedilum motuoense (Orchidaceae, Cypripedioideae), a new species from Motuo, Xizang, China
• A Novel Crustavirus as a Candidate Aetiology of Tail Fan Necrosis in New Zealand Red Rock Lobsters, Jasus edwardsii
• A multilocus phylogeny of Hericium ( Hericiaceae, Russulales )
• Building a robust backbone for Astragalus using a clade‐specific target enrichment bait set
• Revealing Reassortment in Influenza A Viruses with TreeSort
• Mapping-by-Sequencing Reveals Genomic Regions Associated with Seed Quality Parameters in Brassica napus
• Integrating morphology, phylogeny, substrate, and distribution: clarifying the major phylogenetic framework of Pluteus sect. Hispidoderma (Agaricales, Pluteaceae) and describing 18 species
• From genes to Black Rust: genomic insights into corrosive methanogens
• A new white-flowered species of Gagea (Liliaceae) from the Fergana Valley, Uzbekistan and Kyrgyzstan
• Dispersal and isolation of the scaly-foot snail across abyssal insular habitats and through time
• A novel phylogenomics pipeline reveals extensive topological conflict in the evolution of the angiosperm order Cucurbitales
• Molecular study of the status of Angiostrongylus cantonensis in rats in Haiti
• The one that abstained: Psilocybe fuscofulva genome suggests two recent origins of the psilocybin gene cluster in Psilocybe
• Over the top: Three new species of terrestrial breeding frogs (Anura, Terrarana, Pristimantis) from the highlands of the Cordillera de Huancabamba, northwestern Peru
• Molecular phylogenetic assessment of the subfamily Dendronereidinae Pillai, 1961 (Annelida: Nereididae), with the establishment of Tylorrhynchinae subfam. nov. and the descriptions of two new species from Indonesia
• Antifungal Action by Streptomyces globisporus Strain WB03 Against Fusarium cugenangense Causing Gastrodia elata Tuber Rot Disease
• Diversity of polyomaviruses and papillomaviruses in penguins from eastern and western Antarctica
• Local and introduced lineages drive MERS-CoV recombination in Egyptian camels
• Identification of a deep-branching lineage of algae using environmental plastid genomes
• A new species of Alticola (Mammalia, Rodentia, Arvicolinae) from southern Tibet, China
• Meteora sporadica, a protist with incredible cell architecture, is related to Hemimastigophora
• Evolutionary Genomics of Structural Variation in Asian Rice ( Oryza sativa ) Domestication
• Morphology and molecular phylogeny reveal new species and records of Diaporthales from Betula in Xinjiang, China
• Bacterial microbiota associated with the reproductive tissue of stingless bees
• Gene duplication drove functional divergence of two effectors in the maize anthracnose pathogen
• Morphological and phylogenetic analyses reveal three new species associated with Pueraria from Xizang Autonomous Region, China
• Evolutionary speed of proteins in the genus Staphylococcus: a focus on proteins involved in natural competence
• David Marcilhacy: raza hispana. Hispanoamericanismo e imaginario nacional en la españa de la restauración
• Zygosaccharomyces progenitor sp. nov., a new yeast species associated with bees of the genera Apis and Bombus
• Evolution of SL-RNA Genes and Their Splicing Targets in Parasitic Flatworms
• Identification, Characterization, Pathogenicity, and Host Range of Slafractonia indigofera sp. nov. (Dothidotthiaceae) Causing Leaf Spot Disease of Indigofera pseudotinctoria in China
• Expanding the genus Neobaryopsis (Calcarisporiaceae, Hypocreales): descriptions of two new species and two new combinations based on morphological and molecular data
• Nucleotide dependency analysis of genomic language models detects functional elements
• The Evolution of Function in the DNA-Binding Domain of the CRP/FNR Family
• Cold-responsive MtCBF4-MtJMJ13 positive feedback loop negatively regulates anthocyanin biosynthesis in Medicago truncatula
• How much can reticulate evolution entangle plant systematics? Revisiting subfamilial classification of the Malvatheca clade (Malvaceae) on the basis of phylogenomics
• A new deep-branching environmental lineage of algae
• Phylogenetic Reconstruction from Sequences of Plum Pox Virus Samples Collected in the United States Points to Multiple Independent Introductions
• Lifestyles shape genome size and gene content in fungal pathogens
• Phylogeny of Phyllozyma (Spiculogloeaceae, Spiculogloeales) with description of four new species from China
• Pruning the Tree: Comparing OTUs and ASVs in High‐Throughput Sequencing of 5S ‐ IGS Nuclear Ribosomal DNA in Phylogenetic Studies
• Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)
• PrinTE: A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and Contraction
• Split or spread - A spatio-temporal framework for the evolution of annual Arabis (Brassicaceae) in Eurasia
• The plastid genome of the non-photosynthetic plant Rhopalocnemis phalloides is one of the most polymorphic genomes known
• Genetic diversity of late Neanderthals in northwestern Europe
• Genetic evidence for invasive rat‐caused vegetation damage has implications for endemic Caribbean mammal management
• The Rise of Polyploids During Environmental Upheaval
• Insights Into the Origin and Local Adaptation Evolution of the Cultivated Sesame With Telomere‐to‐Telomere High‐Quality Genome
• Key environmental factors determining life history strategies of river fishes and their historical changes in the Yangtze River
• Rediscovery of Lysimachia peduncularis in China: amended description, complete plastid genome, and phylogenomic placement in subgenus Idiophyton (Primulaceae)
• Population genomics of Plasmodium malariae from 4 African countries
• Integrative multi-omics analysis reveals the genetic architecture of floral traits in Anthurium
• Chromosome-level genome assembly of the sacoglossan sea slug Elysia atroviridis
• De novo acyl carrier proteins display structure-independent modification and sequence novelty
• Genome and transcriptome‐based identification and expression profiling of chemosensory gene families across developmental stages and tissues in Sirex noctilio (Hymenoptera: Siricidae)
• Conserved Motifs in the Ligand-Binding Domain of TetR Family Regulators: Identification and Analysis
• Ninetine spiders in Brazilian Caatinga and Cerrado: revision of Kambiwa and description of Sertana gen. nov. (Araneae, Pholcidae), with analyses of predicted range shifts due to climate change
• Towards consistent termite identification: a workflow and insights from West African savannah termite assemblages
• Sida gathwalarum (Malvaceae), a new species from India
• Two novel Tuber species (Tuberaceae, Pezizales) from southwestern China based on morphological and molecular evidence
• Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis
• Comparative analyses of olfactory receptor repertoires reveal evolutionary dynamics and adaptation of freshwater and seawater gobies based on the chromosome-level genomes
• Uncovering haemosporidian diversity in urban Feral Pigeons (Columba livia domestica) in Lisbon, Portugal: integrated molecular and morphological insights
• Two new dioecious species of Vanguerieae (Rubiaceae) from limestone regions in Madagascar
• Sweet Potato Gene Clusters Control Anthocyanin Biosynthesis and Leaf Morphology
• Population differences of chromosome 22q11.2 duplication structure predispose differentially to microdeletion and inversion
• Systematics and biogeography of Chrysogorgiidae from the Indian Ocean: discovery of new species on deep-sea ridges
• Coptis wawushanensis (Ranunculaceae), a new species from Sichuan, China
• Caridina tashanica sp. nov., a new cave shrimp species (Decapoda, Atyidae) from sulphidic water in southwestern Iran
• The genome assembly of Sphaerospora molnari provides novel insights into the rapid evolution and diversification of unique lineage-specific gene groups in myxozoan parasites
• A universal polyphosphate kinase powers in vitro transcription
• Integrating Secondary Structure Information Enhances Phylogenetic Signal in Mitochondrial Protein Coding Genes
• A geological timescale for bacterial evolution and oxygen adaptation
• Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica
• A new species of Hua (Gastropoda, Semisulcospiridae) from Yunnan, southwest China
• Comparative mitochondrial genome analyses of Diptychus maculatus (Actinopterygii, Cypriniformes, Cyprinidae) uncover conserved genome features and phylogenetic relationships of Schizopygopsinae
• First Phylogenomic Assessment of the Amphitropical New World Ant Genus Dorymyrmex (Hymenoptera: Formicidae), a Longstanding Taxonomic Puzzle
• iHDSel software: The price equation and the population stability index to detect genomic patterns compatible with selective sweeps. An example with SARS-CoV-2
• A new species of alien land flatworm in the Southern United States
• Evolution of the Nonvisual and Visual Opsin Gene Repertoire in Ray-Finned Fishes
• Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis
• An integrative description of a new interstitial species of Boninia (Platyhelminthes, Polycladida) from the South China Sea
• Redefining Ceratocystis and allied genera
• The Genomic Basis of the Tristylous Floral Polymorphism: Evidence for a Role of Gene Duplications in a Region of Restricted Recombination
• Comparative mitochondrial genome analysis provides new insights into the classification of Modiolinae
• De novo genome hybrid assembly and annotation of the endangered and euryhaline fish Aphanius iberus (Valenciennes, 1846) with identification of genes potentially involved in salinity adaptation
• Susceptibility to mice and potential evolutionary characteristics of porcine deltacoronavirus
• Catalogue of fungi in China 7. New taxa of lichen-forming fungi
• Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics
• New species and records of ascomycetes on cypress in Beijing, China
• nf-core/proteinfamilies: A scalable pipeline for the generation of protein families
• Expanding Ventilago to incorporate Smythea: new combinations in Ventilagineae (Rhamnaceae) based on novel sequence data and phylogenetic analysis
• Unveiling the hidden connection: Hemichordates and vertebrates share surprising mitochondrial similarities
• Two new species of Papiliotrema (Rhynchogastremataceae, Tremellales) from China
• Identifying Clusters of High Confidence Homologies in Multiple Sequence Alignments
• De novo genome assembly, inversion detection, and worldwide adaptation on the invasive species Styela plicata
• Three new species of Ochrolechia (Ochrolechiaceae, Pertusariales) from Guizhou Province, China
• DNA-targeting short Argonautes complex with effector proteins for collateral nuclease activity and bacterial population immunity
• Pseudocuneopsis heqing sp. nov. (Bivalvia, Unionidae) from karst rivers of Guizhou, China: integrative species delimitation and mitogenomic phylogeny
• An overview of the genus Lobothallia (lichenized Ascomycota, Megasporaceae) in China
• First records of Bathytoshia brevicaudata (Hutton, 1875) (Myliobatiformes, Dasyatidae) from China with mitogenomic evidence
• A multicellular developmental program in a close animal relative
• Genome assembly of the dyeing poison frog provides insights into the dynamics of transposable element and genome-size evolution
• Chemodiversity of Penicillium isolated from alpine and arctic environments, including ten new species
• Origin and biogeographical history of Palaeotropical Piper (Piperaceae): multiple long-distance dispersals from South America initiated during the Middle Eocene climatic optimum
• Stratification of human gut microbiomes by succinotype is associated with inflammatory bowel disease status
• Isolation and genetic characterization of a novel Kevo orbivirus and a strain of Mobuck virus from Ochlerotatus communis mosquitoes in Finland
• Genetic and Antigenic Diversity of Bubaline alphaherpesvirus 1
• Adaptive pangenomic remodeling in the Azolla cyanobiont amid a transient microbiome
• Construction of the super pan-genome for the genus Actinidia reveals structural variations linked to phenotypic diversity
• Two new combinations of Middletonia (Gesneriaceae) in China
• Centromere divergence and allopolyploidy reshape carnivorous sundew genomes
• A customised target capture sequencing tool for molecular identification of Aloe vera and relatives
• Genomic insights into the domestication and genetic basis of yield in papaya
• The frequency and importance of polyploidy in tropical rainforest tree radiations
• A region of suppressed recombination misleads neoavian phylogenomics
• Genome sequence of the ornamental plant Aquilegia vulgaris reveals the flavonoid biosynthesis gene repertoire
• The GATA-like transcription factor Gat201 determines alkaline-restricted growth in Cryptococcus neoformans
• Integrative taxonomy reveals two new species of Ligidium (Crustacea, Isopoda, Oniscidea) from China
• A transposable element insertion in AUX/IAA16 disrupts splicing and causes auxin resistance in Bassia scoparia
• Chaetocapnodium magnum and Chaetocapnodium polonicum from conifer resins disclose an unknown lifestyle in the Capnodiales (Dothideomycetes)
• Yamadazyma akebiae sp. nov. and Y. hainanensis sp. nov. (Debaryomycetaceae, Saccharomycetales) from leaf in China
• Spatiotemporal reconstruction of the North American A(H5N1) outbreak reveals successive lineage replacements by descendant reassortants
• Genome-based reclassification of the genus Lactococcus and two novel species Pseudolactococcus yaeyamensis gen. nov., sp. nov. and Lactovum odontotermitis sp. nov. isolated from the gut of termites
• Molecular phylogeny of the cosmopolitan aquatic plant genus Limosella (Scrophulariaceae) with a particular focus on the origin of the Australasian L. curdieana
• Introducing Melanocucurbitaria uktampratovii sp. nov. and the sexual morph of Melanocamarosporioides ugamica in Melanommataceae (Dothideomycetes, Pleosporales)
• Two new species of Gymnopus sect. Levipedes (Omphalotaceae, Agaricales) from Central and North China
• Overcoming breeding constraints in polyploid oat from evolutionary insights
• Molecular Phylogenetics of Ligusticum (Apiaceae) Based on nrDNA ITS Sequences: Rampant Polyphyly, Placement of the Chinese Endemic Species, and a Much-Reduced Circumscription of the Genus
• The Chloroplast Genome ofSalvia: Genomic Characterization and Phylogenetic Analysis
• Contemporary genetic structure of an endemic freshwater turtle reflects Miocene orogenesis of New Guinea
• In Situ Bacterioplankton Growth Partitioning by High‐Resolution Metatranscriptomics
• Genome diversity and evolution of the duckweed section Alatae comprising diploids, polyploids, and interspecific hybrids
• Homoploid hybrid speciation and recurrent hybridization along the northwestern Iberian mountain chains
• On the status of Nomiapis valga (Gerstäcker) and its distribution (Hymenoptera, Halictidae, Nomiinae), with an identification key for European Nomiapis
• Structure reveals why genome folding is necessary for site-specific integration of foreign DNA into CRISPR arrays
• Synotis lhozhagensis (Asteraceae, Senecioneae), a new species from south-eastern Xizang, China, based on morphological and molecular evidence
• Three new species of Carlosrosaea (Trimorphomycetaceae, Tremellales) from China
• Chromosome-level genome assembly of Pinus massoniana provides insights into conifer adaptive evolution
• Effects of mountain uplift and climatic oscillations on phylogeography and species divergence of Notholirion (Liliaceae)
• A new record of the blackfin goby (Egglestonichthys melanoptera, Gobiidae) from China, with complete mitochondrial genomes of two Egglestonichthys species and their phylogenetic implications
• Comparison of whole-genome assemblies of European river lamprey ( Lampetra fluviatilis ) and brook lamprey ( Lampetra planeri )
• How did evolution halve genome size during an oceanic island colonization?
• Reverse-zoonoses of 2009 H1N1 pandemic influenza A viruses and evolution in United States swine results in viruses with zoonotic potential
• Three new species of Fomitiporia (Hymenochaetales, Basidiomycota) from tropical dry forests in Ecuador and Peru
• Homospermidine synthase evolution and the origin(s) of pyrrolizidine alkaloids in Apocynaceae
• Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery
• Addressing distributional and taxonomic uncertainty in the deep-sea giant isopod genus Bathynomus with an integrated observational and molecular framework
• Feature Architecture-Aware Ortholog Search With fDOG Reveals the Distribution of Plant Cell Wall-Degrading Enzymes Across Life
• Systematic position of edible tropical oysters and first record of genus Talonostrea (Ostreidae) in the Myeik coastal area, Myanmar
• The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024
• Target enrichment data reveal rapid divergence with reticulate evolution of Maianthemum (Asparagaceae: Convallarioideae) in the Himalayan‐Hengduan Mountains and eastern Asia
• An Irish cocktail of flatworm, earthworm and parasite DNAs: genomics of invasive land flatworms (Geoplanidae) reveal infestations by two new Mitosporidium species (Microsporidia)
• Tangled webs and spider‐flowers: Phylogenomics, biogeography, and seed morphology inform the evolutionary history of Cleomaceae
• Seeing through the hedge: Phylogenomics of Thuja (Cupressaceae) reveals prominent incomplete lineage sorting and ancient introgression for Tertiary relict flora.
• Pre-exposure antibody prophylaxis protects macaques from severe influenza
• Multiple mechanisms explain loss of anthocyanins from betalain‐pigmented Caryophyllales, including repeated wholesale loss of a key anthocyanidin synthesis enzyme
• Embeddings from protein language models predict conservation and variant effects
• A new family of ant-associated fungi in Chaetothyriales
• Infection of papaya (Carica papaya) by four powdery mildew fungi
• Acceleration of Olfactory Receptor Gene Loss in Primate Evolution: Possible Link to Anatomical Change in Sensory Systems and Dietary Transition
• Ultraconserved elements show utility in phylogenetic inference of A dephaga ( C oleoptera) and suggest paraphyly of ‘Hydradephaga’
• From macro to micro: De novo genomes of Aedes mosquitoes enable comparative genomics among close and distant relatives
• Opposing roles of pseudokinases NRBP1 and NRBP2 in regulating L1 retrotransposition
• Arctic Ocean virus communities and their seasonality, bipolarity, and prokaryotic associations
• Resolving the early‐diverging clades of Loasaceae subfam. Loasoideae – Segregating the new genus Prosa from the Atacama Desert genus Huidobria
• Rhodotorula silvicola sp. nov., a new yeast species from plant-associated substrates and mushroom
• Pangenome analysis reveals the evolutionary dynamics of repeat-based holocentromeres
• Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis
• A phylogenetic and morphological study of the genus Dermoloma (Agaricales, Tricholomataceae) in Europe and North America exposes inefficiency of opportunistic species descriptions
• Pseudobaorangia (Boletaceae, Boletales), a new genus for Boletus lakhanpalii
• Two new species of Fulvifomes (Hymenochaetales, Basidiomycota) from South America
• Three new species of Ophiocordyceps (Hypocreales, Ophiocordycipitaceae) and a new host record for Hirsutella vermicola from China
• Functionally comparable but evolutionarily distinct nucleotide-targeting effectors help identify conserved paradigms across diverse immune systems
• The High‐Affinity Chymotrypsin Inhibitor Eglin C Poorly Inhibits Human Chymotrypsin‐Like Protease: Gln192 and Lys218 Are Key Determinants
• Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species
• Two new species of Micropsalliota (Agaricales, Agaricaceae) from subtropical regions of China
• Apiaceae FNS I originated from F3H through tandem gene duplication
• The Complex Interplay between Evolutionary Flexibility and Diversification in a Family of Spiders
• Lineage diversification and rampant hybridization among subspecies explain taxonomic confusion in the endemic Hawaiian fern Polypodium pellucidum
• Coping with Ineffective Overlap in Multilocus Phylogenetics
• Two new species of stone loaches of the genus Barbatula (Cypriniformes: Nemacheilidae) from Europe with a neotype designation of B. barbatula (Teleostei: Nemacheilidae)
• Coralline red algal species diversity at a shallow rhodolith bed in warm-temperate Japan, including two new species of Roseolithon (Hapalidiales, Corallinophycidae)
• An integrative re-evaluation of the Fusarium sambucinum species complex
• Phylogeny of gracillariid leaf‐mining moths: evolution of larval behaviour inferred from phylogenomic and Sanger data
• Phylogenomics Unveils the Complex Evolution of Retroviruses in Birds
• Accelerated Pseudogenization in the Ancient Endosymbionts of Giant Scale Insects
• Lilium huanglongense (Liliaceae): a newly-discovered species in north-western Sichuan, China
• Exploiting Viral DNA Genomes to Explore the Dispersal History of African Swine Fever Genotype II Lineages in Europe
• Exploration of Hiptage (Malpighiaceae) diversity in Vietnam reveals a new species with wingless fruits
• Tip optofluidic immunoassay: Evaluating COVID-19 antibody protection with 1 μL fingertip blood
• An eDNA metabarcoding system for detecting scleractinian corals to the generic level along the Japanese coast
• A new species Erythrotrichia bohanensis sp. nov. (Erythropeltales, Rhodophyta) from the coast of China
• Three new species of Camporesiomyces (Tubeufiaceae, Tubeufiales, Dothideomycetes) associated with coffee in Yunnan, China
• Homo sapiens reached the higher latitudes of Europe by 45,000 years ago
• Phylogenomics and the rise of the angiosperms
• Taxonomy and phylogeny of Cortinarius sect. Anomali in China
• Whole-genome based phylogeny and comparative genomics of Sporidiobolales and related taxa of Basidiomycetes
• Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil
• Pangenome analysis provides insights into the evolution of mango ( Mangifera spp.)
• Taxonomic studies on the genus Hydrocotyle (Apiales) from China: The distribution and morphology of H. chiangdaoensis, with H. calcicola reduced to a synonym
• Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera
• Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls
• Salty secrets of Halobacterium salinarum AD88: a new archaeal ecotype isolated from Cuatro Cienegas Basin
• Genomic characterisation, phylogenetic comparison and candidate gene identification of the lipid transfer proteins gene family in pear (Pyrus bretschneideri Rehd.) and other Rosaceae species
• Allelic variation and duplication of the dmrt1 were associated with sex chromosome turnover in three representative Scatophagidae fish species
• Design of CoQ10 crops based on evolutionary history
• The haplotype-resolved T2T genome for Bauhinia × blakeana sheds light on the genetic basis of flower heterosis
• Morphological and molecular evidence suggests that Indosasa gigantea and Acidosasa glauca (Poaceae, Bambusoideae, Arundinarieae) are conspecific
• Range-wide mitochondrial phylogeography of Sorex monticola: evolutionarily distinct clades occupy divergent abiotic niches
• Palliocystidium, a new genus in the family Hydnodontaceae (Trechisporales)
• Comparative Genomics Supports Sex and Meiosis in Diverse Amoebozoa
• Sinocrassula obliquifolia (Crassulaceae), a new species from China
• Rise up, Rhizoctonia: moving to one fungus, one name in the Ceratobasidiaceae (Agaricomycetes, Cantharellales)
• Phylogenomics confirm the monophyly of Guzmania (Bromeliaceae: Tillandsioideae) and provide evidence regarding alternative hybridization scenarios involving G. monostachia
• The polyphasic analysis of two native Raphidiopsis isolates supports the unification of the genera Raphidiopsis and Cylindrospermopsis (Nostocales, Cyanobacteria)
• Detecting Interspecific Positive Selection Using Convolutional Neural Networks
• PoMSA: An Efficient and Precise Position-based Multiple Sequence Alignment Technique
• Co-occurrence is associated with horizontal gene transfer across marine bacteria independent of phylogeny
• Phosphate deficiency reduces nodule formation through a phosphate starvation response-like protein in Phaseolus vulgaris
• Analysis-ready VCF at Biobank scale using Zarr
• A phylogenomic approach to disentangling the evolution of the large and diverse daisy tribe Anthemideae (Asteraceae)
• The terrestrial flatworm Microplana scharffi (Geoplanidae, Microplaninae): mitochondrial genome, phylogenetic proximity to the Bipaliinae and genes related to regeneration
• Marine vs. terrestrial: links between the environment and the diversity of Copia retrotransposon in metazoans
• The R2R3-MYB gene family in Cicer arietinum: genome-wide identification and expression analysis leads to functional characterization of proanthocyanidin biosynthesis regulators in the seed coat
• Whole snake genomes from eighteen families of snakes (Serpentes: Caenophidia) and their applications to systematics
• Five new genera and revival of a genus based on molecular phylogenetic and morphological evidence in Trichosporeae (Gesneriaceae)
• The spatiotemporal origin of Polynesian blueberries ( Vaccinium )
• Infectome analysis of bat kidneys from Yunnan province, China, reveals novel henipaviruses related to Hendra and Nipah viruses and prevalent bacterial and eukaryotic microbes
• Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet
• Phylogenomics of the Bupleurum in East Asia: Insights into distribution patterns and diversification
• A secreted citrus protease cleaves an outer membrane protein of the Huanglongbing pathogen
• Phylogeny and reclassification of Limacodidae worldwide, with emphasis on the ontogeny of larval defenses (Lepidoptera: Zygaenoidea)
• Revisiting the molecular circumscription of Sladeniaceae sensu lato (Ericales): Insights from phylogenetic discordance
• Alternative splicing of REGULATOR OF LEAF INCLINATION 1 modulates phosphate starvation signaling and growth in plants
• Records of Palisadia Laseron, 1956 from south-western Japan and phylogenetic relationships of the genus within the family Eulimidae (Caenogastropoda: Vanikoroidea)
• Active Learning-Guided Seq2Seq Variational Autoencoder for Multi-target Inhibitor Generation
• Morphology, complete mitochondrial genome, and molecular phylogeny of Rhabdias macrocephalum n. sp. (Nematoda: Rhabdiasidae) from Diploderma splendidum (Reptilia: Agamidae)
• Bimodal centromeres in pentaploid dogroses shed light on their unique meiosis
• Molecular systematics of teioid lizards (Teioidea/Gymnophthalmoidea: Squamata) based on the analysis of 48 loci under tree‐alignment and similarity‐alignment
• Synonymy of Pachyarthron compressum (Corallinaceae, Rhodophyta) with Corallina officinalis and proposal for Corallina officinalis subsp. cretacea
• Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
• Phylotranscriptomic evidence for pervasive ancient hybridization among Old World salamanders
• Chloroplast phylogenomics and character evolution of eastern Asian Astragalus (Leguminosae): Tackling the phylogenetic structure of the largest genus of flowering plants in Asia
• Phylogenomic relationships and historical biogeography in the South American vegetable ivory palms (Phytelepheae)
• Phylogenetic relationships of ghost slugs (Selenochlamys) and overlooked instances of limacization in Western Palaearctic Limacoidei (Gastropoda: Stylommatophora)
• Phylogenomics reveal extensive phylogenetic discordances in Diospyros (Ebenaceae) of China
• Moderate introgression in a single individual genome is sufficient to mislead phylogenomic inference of Triplophysa
• Modeling defensive functions of alkaloids within diverse chemical portfolios
• Origin of obligate dim-light foraging in nomiine sweat bees (Halictidae: Nomiinae), with the description of a new species of Mellitidia
• Catalogue of fungi in China 5. Preliminary survey of macrofungi in Medog, Southwest China
• Fructilactobacillus frigidiflavus sp. nov., a pigmented species, and Levilactobacillus lettrarii sp. nov., a propionate-producing species isolated from sourdough
• An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes
• Sinosasa damingshanensis (Poaceae, Bambusoideae), a new combination supported by morphological and molecular evidence
• Refining the Na V 1 .7 pharmacophore of a class of venom‐derived peptide inhibitors via a combination of in silico screening and rational engineering
• The Arabidopsis thaliana core splicing factor PORCUPINE/SmE1 requires intron-mediated expression
• Multi-gene phylogeny and morphological characters reveal seven new species of Micropsalliota (Agaricales, Agaricaceae) from southern China, with an updated key for the species distributed in China
• Eleven new species of Trichoderma (Hypocreaceae, Hypocreales) from China
• Taxonomic revision of Geotrichum and Magnusiomyces , with the descriptions of five new Geotrichum species from China
• Large-scale phylogenomic insights into the evolution of the Hymenochaetales
• Diversity, divergence time, and biogeography of the genus Albatrellus (Agaricomycetes, Russulales)
• Morphological characters and molecular data reveal ten new forest macrofungi species from Hebei Province, North China
• The genus Thaxterogaster (Cortinariaceae): phylogeny and species diversity in Western China
• Catalogue of fungi in China 2. Ramaria from northern China
• Ten new species of Leucoagaricus and Leucocoprinus from Beijing: Revealing rich diversity in temperate regions
• Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia)
• Exploring the genetic mechanisms driving KIR diversification
• Extensive photobiont sharing in a rapidly radiating cyanolichen clade
• Catalogue of fungi in China 4: Didymiaceae and Physaraceae (Myxomycetes)
• Penicillium psychrofluorescens sp. nov., a naturally autofluorescent Antarctic fungus
• Age, sex, and mitochondrial-haplotype influence gut microbiome composition and metabolites in a genetically diverse rat model
• Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
• Stepwise emergence of the neuronal gene expression program in early animal evolution
• A premature termination codon mutation in the onion AcCER2 gene is associated with both glossy leaves and thrip resistance
• Systems acclimation to osmotic stress in zygnematophyte cells
• De novo genome assembly of white clover (Trifolium repens L.) reveals the role of copy number variation in rapid environmental adaptation
• Heat‐responsive MaHSF11 transcriptional activator positively regulates flavonol biosynthesis and flavonoid B‐ring hydroxylation in banana ( Musa acuminata )
• Novel genus and species of Diaporthostomataceae (Diaporthales) in China
• A cytosolic ferredoxin-independent hydrogenase possibly mediates hydrogen uptake in Trichomonas vaginalis
• Magnetotactic bacteria affiliated with diverse Pseudomonadota families biomineralize intracellular Ca-carbonate
• Population genetic data (COI, ddRAD) of Sialis lutaria (Insecta, Megaloptera) from the Emscher catchment (Germany)
• Firefly genomes illuminate parallel origins of bioluminescence in beetles
• Bulbillosins A - E, azaphilones from Tengochaeta bulbillosa sp. nov. (Chaetomiaceae), a root endophyte of the Chinese medicinal plant Aster tataricus
• The mixed auto‐/allooctoploid genome of Japanese knotweed (Reynoutria japonica) provides insights into its polyploid origin and invasiveness
• Systematic exploration of bacterial form I rubisco maximal carboxylation rates
• Gene family innovation, conservation and loss on the animal stem lineage
• Four new species of Erioscyphella (Leotiomycetes, Helotiales) from southwestern China
• mtGrasp: Streamlined reference‐grade mitochondrial genome assembly and standardization to enhance metazoan mitogenome resources
• Repeat turnover meets stable chromosomes: repetitive DNA sequences mark speciation and gene pool boundaries in sugar beet and wild beets
• Torulaspora lindneri sp. nov., a novel ascomycetous yeast species isolated from China and Thailand
• Mini-bacterioferritins: Structural insight into a new type of ferritin-like protein from an anaerobic methane-oxidising archaeon
• Evolution of a Plasmid Regulatory Circuit Ameliorates Plasmid Fitness Cost
• Differential Conservation and Loss of CR1 Retrotransposons in Squamates Reveals Lineage-Specific Genome Dynamics across Reptiles
• Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data
• A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi
• A deficient CP24 allele defines variation for dynamic nonphotochemical quenching and photosystem II efficiency in maize
• A Silurian pseudocolonial pterobranch
• Genomic exploration and functional insights into the diversification of the Snf2 gene family in subgenomes of Triticum aestivum
• Assembly and comparative analysis of the complete mitochondrial genome of Daedaleopsis sinensis (Polyporaceae, Basidiomycota), contributing to understanding fungal evolution and ecological functions
• Generic concepts in Nectriaceae
• The Effects of Rapid Mitochondrial Gene Loss on Organellar Proteomes
• Origin of Gibberellin-Dependent Transcriptional Regulation by Molecular Exploitation of a Transactivation Domain in DELLA Proteins
• Are interphylum spiralian relationships resolvable?
• Spiroplasma Display an Intricate Continuum of Infection Heterogeneity and Persistence in Myrmica Ants
• Image-based physical characterization of magnetotactic bacteria from an environmental sample
• The evidence for anthocyanins in the betalain-pigmented genus Hylocereus is weak
• Effects of different mycorrhizal types of dispersedly retained trees on the diversity of ectomycorrhizal fungi in neighboring <i>Abies sachalinensis</i> seedlings
• A ‘tail’ as old as time: insights into tardigrade posterior trunk development
• Another dark taxon comes to light: Semicentenialomycetes, a new class within the Pucciniomycotina (Basidiomycota), and its first described representative, Semicentenialea rex
• ONTbarcoder 2.0: rapid species discovery and identification with real‐time barcoding facilitated by Oxford Nanopore R10 .4
• Phylogeny and biogeography of the fern genus Hymenasplenium (Aspleniaceae), with special reference to island speciation
• Gastrochilus obovatifolius (Orchidaceae, Aeridinae), a new species from the Daba Mountains of Chongqing, China
• Diversification and differentiation of Stipa species shed light on the regional evolutionary history of the eastern Eurasian steppe
• Phylogenomic and morphological evidence supports the reinstatement of the bamboo genus Clavinodum from Oligostachyum (Poaceae: Bambusoideae)
• Museum specimens shedding light on the evolutionary history and cryptic diversity of the hedgehog family Erinaceidae
• KIPEs3: Automatic annotation of biosynthesis pathways
• Algal Symbiont Diversity and Host Fitness Variation in Amoebozoan Photosymbiosis
• Six Newly Sequenced Chloroplast Genomes From Quadriflagellate Chlamydomonadales (Chlorophyceae): Phylogeny and Comparative Genome Analyses
• Phylogenetic Diversity and Geographic Distribution of Atlantic Salmon Calicivirus in Major Salmon Farming Regions
• A combination of stabilizing selection and random walk are associated with phylogenetic signal in hard pines
• Human microbiota influence the immune cell composition and gene expression in the tumor environment of a murine model of glioma
• An InDel variant in the promoter of the NAC transcription factor MdNAC18.1 plays a major role in apple fruit ripening
• Phylogenomic mixture models outperform homogeneous and partitioned models
• Structural insights into light harvesting by antenna-containing rhodopsins in marine Asgard archaea
• Comprehensive revision of Lycogala (Myxomycetes) in subtropical China: morphological and phylogenetic insights and ten new species
• Using pangenome variation graphs to improve mutation detection in a large DNA virus
• East Asia–eastern North America disjunction revisited: Possible westward colonization route via the Western Palearctic in Carex sect. Paniceae (Cyperaceae)
• Inter‐archipelago dispersal, anagenetic evolution, and the origin of a rare, enigmatic plant genus on a remote oceanic archipelago
• Phylogenetic relationships versus environmental impacts on the distribution and traits of Laureae (Lauraceae) species within and outside karst tiankengs
• Patterns of Niche Shift in Allopolyploid Adiantum viridimontanum (Pteridaceae) Across Habitat and Range Scales
• A taxogenomic view of the genus Torulaspora: an expansion from ten to twenty-two species
• Integrated analyses reveal extensive cytonuclear discordance and two new members of Rhodiola
• Non-adaptive Radiation Promotes Phenotypic Diversification and Convergent Evolution of Aposematic Mimicry in a Highly Diverse Genus of Megaloptera
• Phylogenomics, historical biogeography, and diversification of leaf traits in the Malagasy‐endemic genus Uncarina (Pedaliaceae)
• Plastome evolution in the Caesalpinia group (Caesalpinioideae, Fabaceae): Comparative genomics reveals genome dynamics, phylogenetic insights and adaptive evolution
• De novo assembly and annotation of the Empoasca fabae mitochondrial genome
• Out of Africa: Phylogenomics and biogeography of Tribe Euphorbieae (Euphorbiaceae)
• The genome of the Australian water dragon (Intellagama lesueurii), an agamid model for urban adaptation
• Methanocaldococcus abyssi sp. nov., a novel hyperthermophilic methanogen isolated from the recently discovered La Scala hydrothermal deep-sea vent field, Woodlark Ridge
• Phylogenetic relationships and modeling distributions of the monotypic genus Dolichopetalum (Apocynaceae): Implications for conservation of unique biodiversity in Asian subtropical karst areas
• Molecular phylogeny of the Palaearctic butterfly genus Pseudophilotes (Lepidoptera: Lycaenidae) with focus on the Sardinian endemic P. barbagiae
• Conservation and divergence of regulatory architecture in nitrate-responsive plant gene circuits
• Microfungi associated with dying quiver trees ( Aloidendron dichotomum ) in South Africa
• Diversity of soil-borne Gliocladiopsis from Indonesia, Malaysia and Vietnam
• The baldcypress genome provides insights into the adaptive evolution of flooding stress tolerance
• Mitogenomics provide insights into the tribe‐level systematics and historical phylogeography of band‐winged grasshoppers (Orthoptera: Acrididae: Oedipodinae)
• Phylogeny and diversification of the true water bugs (Insecta: Hemiptera: Heteroptera: Nepomorpha)
• Newly Diagnosed Individuals in Molecular HIV-1 Clusters in Rhode Island Over 3 Decades
• A new genus and species of shrew (Mammalia: Soricidae) from Palawan Island, Philippines
• The influence of early life exposures on the infant gut virome
• Phylogeny.fr: the phylogenetic platform designed for non-specialists
• Emergence of SARS-CoV-2 subgenomic RNAs that enhance viral fitness and immune evasion
• A new deep-sea Pectinodonta species (Mollusca, Gastropoda, Patellogastropoda, Pectinodontidae) from a wood fall near Johnston Atoll, Central Pacific
• STRIDE: Species Tree Root Inference from Gene Duplication Events
• A Molecular Portrait of De Novo Genes in Yeasts
• Genome Assembly of the Dyeing Poison Frog Provides Insights into the Dynamics of Transposable Element and Genome-Size Evolution
• Sticta flakusiorum and S. kukwae—two additional new species from the Neotropics (Peltigerales, Peltigeraceae)
• A novel auxin methyltransferase of the SABATH family for phenylacetic acid methylation is conserved in potato and tomato
• Freshwater fungi in the karst plateau wetlands from Guizhou Province, China: taxonomic novelties in Melanommataceae (Pleosporales)
• Phylogeny of tremellomycetous yeasts and related dimorphic and filamentous basidiomycetes reconstructed from multiple gene sequence analyses
• Re-examination of species limits in Aspergillus section Flavipedes using advanced species delimitation methods and description of four new species
• Population genomics reveals historical and ongoing recombination in the Fusarium oxysporum species complex
• Community of arbuscular mycorrhizal fungi in a broad-leaved forest in the Fukiage Garden of the Imperial Palace, Tokyo Japan
• Whole genome sequence data of Mycolicibacterium parafortuitum Panama NTM 1 from a dairy farm in Panama
• Rapid and dynamic evolution of a giant Y chromosome in Silene latifolia
• Efficient Inference of Macrophylogenies: Insights from the Avian Tree of Life
• Five new epiphytic species of Vishniacozyma (Bulleribasidiaceae, Tremellales) from China
• Origin and stepwise evolution of vertebrate lungs
• When One Global Invasion Hides Another—Cryptic Interspecific Invasion in Freshwater Gastropods
• Hidden population turnover of small odontocetes in the northwestern North Pacific during the Holocene
• Sinocrassula holotricha (Crassulaceae), a new species from Sichuan, China
• Morphological and phylogenetic analyses reveal four novel species of Distoseptispora (Distoseptisporaceae, Distoseptisporales) from southern China
• Emergence of highly pathogenic avian influenza viruses H5N1 and H5N5 in white-tailed eagles, 2021–2023
• The wheat NLR pair RXL/Pm5e confers resistance to powdery mildew
• Unstable anthocyanin pigmentation in Streptocarpus sect. Saintpaulia (African violet) is due to transcriptional selectivity of a single MYB gene
• Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes
• Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes
• Convergent Gene Duplication in Arctic and Antarctic Teleost Fishes
• Taxonomic reevaluation on <i>Pyrrhoderma</i> (<i>Basidiomycota</i>, <i>Hymenochaetales</i>) and reclassification of <i>Pyrrhoderma</i> species based on phylogenetic and type studies
• Validity of <i>Diderma microsporum</i> (Myxomycetes) as an independent species supported by morphological and phylogenetic analyses
• Phylogeny and historical biogeography analysis support Caucasian and Mediterranean centres of origin of key holoparasitic Orobancheae (Orobanchaceae) lineages
• Chromosomal inversions mediated by tandem insertions of transposable elements
• Origin of subgenomes in the circumboreal allopolyploid carnivorous plant Drosera anglica (Droseraceae)
• NHSL3 controls single and collective cell migration through two distinct mechanisms
• A tale of caution: How endogenous viral elements affect virus discovery in transcriptomic data
• Development of broad‐spectrum human monoclonal antibodies for rabies post‐exposure prophylaxis
• Microbial landscapes in Trinervitermes trinervoides termite colonies are affected by mound compartments and soil properties but not by symbiotic Podaxis fungi
• Functional role of the type 1 pilus rod structure in mediating host-pathogen interactions
• Phylogenomics of neglected flagellated protists supports a revised eukaryotic tree of life
• Unveiling hidden diversity: Phylogenomics of neotomine rodents and taxonomic implications for the genus Peromyscus
• Genome dynamics across the evolutionary transition to endosymbiosis
• RNA language models predict mutations that improve RNA function
• Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny
• The complete sequence of a human Y chromosome
• Evolutionary origin and functional investigation of the widely conserved plant PEBP gene STEPMOTHER OF FT AND TFL1 (SMFT)
• Why are ACE2 binding coronavirus strains SARS‐CoV / SARS‐CoV ‐2 wild and NL63 mild?
• Phylogenomic support for the allopolyploid origin of the northwest Iberian endemic orchid Dactylorhiza cantabrica with Hyb‐Seq
• Diversity in olfactory receptor repertoires is associated with dietary specialization in a genus of frugivorous bat
• Evaluation of sequence-based tools to gather more insight into the positioning of rhizogenic agrobacteria within the Agrobacterium tumefaciens species complex
• Genomic characterization uncovers transmission dynamics of Marburg Virus in Rwanda following a single zoonotic spillover event
• Uncovering the magnitude of African pangolin poaching with extensive nanopore DNA genotyping of seized scales
• Clarifying the phylogenetic placement of Eupoinae Maddison, 2015 (Araneae, Salticidae) with ultra-conserved element data
• Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae)
• Next-generation phylogeography reveals unanticipated population history and climate and human impacts on the endangered floodplain bitterling (Acheilognathus longipinnis)
• A unique symbiosome in an anaerobic single-celled eukaryote
• Integrative taxonomy solves taxonomic impasses: a case study from Epyrinae (Hymenoptera, Bethylidae)
• Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments
• A nuclear genome assembly of an extinct flightless bird, the little bush moa
• CARD-like domains mediate anti-phage defense in bacterial gasdermin systems
• Bacteriocins of Non-aureus Staphylococci Isolated from Bovine Milk
• The impact of social complexity on the efficacy of natural selection in termites
• A taxon-rich and genome-scale phylogeny of Opisthokonta
• A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes)
• A new species of Brachycephalus (Anura: Brachycephalidae) from the northern portion of the state of Rio de Janeiro, southeastern Brazil
• The Bryophyte Phylogeny Group: A revised familial classification system based on plastid phylogenomic data
• Genomic characterization of a nematode tolerance locus in sugar beet
• Gut microbiome diversity within Clostridia is negatively associated with human obesity
• Conserved amino acid residues and gene expression patterns associated with the substrate preferences of the competing enzymes FLS and DFR
• Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)
• Formal recognition and classification of gene transfer agents as viriforms
• Optimizing an integrated biovigilance toolbox to study the spatial distribution and dynamic changes of airborne mycobiota, with a focus on cereal rust fungi in western Canada
• Potential involvement of beta-lactamase homologous proteins in resistance to beta-lactam antibiotics in gram-negative bacteria of the ESKAPEE group
• Newly identified diversity of Dinomycetaceae (Rhizophydiales, Chytridiomycota), a family of fungal parasites of marine dinoflagellates
• A retroviral link to vertebrate myelination through retrotransposon-RNA-mediated control of myelin gene expression
• The genome sequence of the Montseny horsehair worm, Gordionus montsenyensis sp. nov., a key resource to investigate Ecdysozoa evolution
• Comprehensive phylogeny of Pieridae butterflies reveals strong correlation between diversification and temperature
• The danger zone: The joint trap of incomplete lineage sorting and long‐branch attraction in resolving the Gondwanan origin of Rafflesiaceae and Apodanthaceae
• Schnabelia jiuzhaigouensis (Lamiaceae, Ajugoideae), a new species from Sichuan, China
• Comparative analysis of 326 chloroplast genomes in Chinese jujube ( Ziziphus jujuba ): Structural variations, horizontal gene transfer events, and evolutionary patterns impacting its domestication from wild jujube
• Dispersal across Wallace's Line: A case study in Endiandra
• <i>Microstoma longipilum</i> sp. nov. (<i>Sarcoscyphaceae, Pezizales</i>) from Japan
• Phylogenetic analyses suggest centipede venom arsenals were repeatedly stocked by horizontal gene transfer
• Taxonomic and ecological significance of synnema-like structures/acanthophyses produced by <i>Physisporinus</i> (<i>Meripilaceae, Polyporales</i>) species
• Проблема достоверности в оценке численности электората США (1770-1840-е гг)
• Viral metagenomics reveals diverse virus-host interactions throughout the soil depth profile
• Diversity and dissemination of viruses in pathogenic protozoa
• System-wide mapping of peptide-GPCR interactions in C. elegans
• Metazoa‐level USCOs as markers in species delimitation and classification
• Origin of fungal hybrids with pathogenic potential from warm seawater environments
• The de novo genome of the Black-necked Snakefly (Venustoraphidia nigricollis Albarda, 1891): A resource to study the evolution of living fossils
• Reference genome for the Mojave poppy bee (Perdita meconis), a specialist pollinator of conservation concern
• TMPRSS2 is a functional receptor for human coronavirus HKU1
• Biosynthesis of gibberellin-related compounds modulates far-red light responses in the liverwort Marchantia polymorpha
• Liverwort bHLH transcription factors and the origin of stomata in plants
• Genome and transcriptome of Selaginella kraussiana reveal evolution of root apical meristems in vascular plants
• The genome of the invasive and broadly polyphagous Diaprepes root weevil, Diaprepes abbreviatus (Coleoptera), reveals an arsenal of putative polysaccharide-degrading enzymes
• Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination
• Genomic screening of 16 UK native bat species through conservationist networks uncovers coronaviruses with zoonotic potential
• Fusarium graminearum: pathogen or endophyte of North American grasses?
• Whole Genome Sequencing-Based Tracing of a 2022 Introduction and Outbreak of Xanthomonas hortorum pv. pelargonii
• New insights into the distribution, ecology, and systematic position of the rare water mite Rutripalpus limicola Sokolow, 1934 (Acari: Rutripalpidae)
• Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses
• Molecular evolutionary trends and biosynthesis pathways in the Oribatida revealed by the genome of Archegozetes longisetosus
• Himalayan or tropical Asian origin: New insights into the phylogeny, biogeography, and systematics of the fern genus Selliguea and its allied genera (Polypodiaceae)
• Functional diversification of a wild potato immune receptor at its center of origin
• Introducing two new genera, Paivomyces gen. nov. and Pseudoselenophoma gen. nov. , in Saccotheciaceae ( Dothideales )
• A novel genus and new records of Dothideomycetes associated with Litchi chinensis litter from Guangdong Province, China
• Accumulation of a Biparentally Inherited Neptune Transposable Element in Natural Killifish Hybrids ( Fundulus diaphanus × F. heteroclitus )
• Phylogenomics of Elongate-Bodied Springtails Reveals Independent Transitions from Aboveground to Belowground Habitats in Deep Time
• Unearthing Modes of Climatic Adaptation in Underground Storage Organs Across Liliales
• Description of a new species of Histampica (Ophiuroidea: Ophiothamnidae) from cold seeps in the South China Sea and analysis of its mitochondrial genome
• Dietary Breadth Predicts Toxin Expression Complexity in the Venoms of North American Gartersnakes
• Growing old, yet staying young: The role of telomeres in bats’ exceptional longevity
• New observations of the enigmatic West African Cellana limpet (Mollusca: Gastropoda: Nacellidae)
• The Evolutionary History of the African Fruit Bats (Chiroptera: Pteropodidae)
• A global view of human centromere variation and evolution
• Molluscs for Sale: Assessment of Freshwater Gastropods and Bivalves in the Ornamental Pet Trade
• Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages
• Deadly mushrooms of the genus Galerina found in Antarctica colonized the continent as early as the Pleistocene
• Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia
• Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand
• A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
• A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction
• Molecular phylogenetics of the genus Costularia (Schoeneae, Cyperaceae) reveals multiple distinct evolutionary lineages
• Evolutionary History of the Morocco lizard-Fingered Geckos of the Saurodactylus brosseti Complex
• Parsing polyphyletic Pueraria: Delimiting distinct evolutionary lineages through phylogeny
• Phylogenetic systematics of leaffishes (Teleostei: Polycentridae, Nandidae)
• A cellular entity retaining only its replicative core: Hidden archaeal lineage with an ultra-reduced genome
• Phylogeny of the Detarioid Legume Genera Cynometra and Maniltoa (Leguminosae)
• Phylogenomic Evidence Overturns Current Conceptions of Social Evolution in Wasps (Vespidae)
• From shallow to deep divergences: mixed messages from Amazon Basin cichlids
• A tale of two soft-shell clams: an integrative taxonomic analysis confirms Mya japonica as a valid species distinct from Mya arenaria (Bivalvia: Myidae)
• Genome sequences identify three families of Coleoptera as morphologically derived click beetles (Elateridae)
• Interglacial refugia on tropical mountains: Novel insights from the summit rat (Rattus baluensis), a Borneo mountain endemic
• The evolutionary history of dogs in the Americas
• Systematics, phylogeny and biogeography of the Australasian leaf-curling orb-weaving spiders (Araneae: Araneidae: Zygiellinae), with a comparative analysis of retreat evolution
• Cryptic diversity of limestone karst inhabiting land snails (Cyclophorus spp.) in northern Vietnam, their evolutionary history and the description of four new species
• Historical biogeography of the hyperdiverse hidden snout weevils (Coleoptera, Curculionidae, Cryptorhynchinae)
• Hidden diversity in the Brazilian Atlantic rainforest: the discovery of Jurasaidae, a new beetle family (Coleoptera, Elateroidea) with neotenic females
• Amended generic classification of the marine gastropod family Phenacolepadidae: transitions from snails to limpets and shallow-water to deep-sea hydrothermal vents and cold seeps
• Contrasting statistical patterns in melodic and molecular evolution reveal distinctive constraints in a culturally evolving system
• Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology
• Influenza A(H3N2) Virus in Swine at Agricultural Fairs and Transmission to Humans, Michigan and Ohio, USA, 2016
• Discordance between mitochondrial, nuclear, and symbiont genomes in aphid phylogenetics: who is telling the truth?
• A High-quality Reference Genome and Tissue Expression Atlas for the European Lobster (Homarus gammarus).
• A comprehensive phylogeny of flat bark beetles (Coleoptera: Cucujidae) with a revised classification and a new South American genus
• A congruent topology for deep gastropod relationships
• Revisited – the species of Tweeting vineyard snails, genus Cantareus Risso, 1826 (Stylommatophora, Helicidae, Helicinae, Otalini)
• Molecular systematics of the land snail family Orculidae reveal polyphyly and deep splits within the clade Orthurethra (Gastropoda: Pulmonata)
• Prediction of a peptidome for the ecotoxicological model Hyalella azteca (Crustacea; Amphipoda) using a de novo assembled transcriptome
• A Reverse Ecology Approach Based on a Biological Definition of Microbial Populations
• Natural Selection Shapes Variation in Genome-wide Recombination Rate in Drosophila pseudoobscura
• Putting keyhole limpets on the map: phylogeny and biogeography of the globally distributed marine family Fissurellidae (Vetigastropoda, Mollusca)
• A distinctive new species of flowerpecker (Passeriformes: Dicaeidae) from Borneo
• The zoogeography of extant rhabdopleurid hemichordates (Pterobranchia : Graptolithina), with a new species from the Mediterranean Sea
• Insights into the symbiotic relationship between scale worms and carnivorous sponges (Cladorhizidae, Chondrocladia)
• Integrated analysis of genomics and transcriptomics revealed the genetic basis for goaty flavor formation in goat milk
• Phylogeny and evolution of phytophagous ladybird beetles (Coleoptera: Coccinellidae: Epilachnini), with recognition of new genera
• When predator becomes prey: investigating the salivary transcriptome of the shark-feeding leechPontobdella macrothela(Hirudinea: Piscicolidae)
• An Unbiased Molecular Approach Using 3′-UTRs Resolves the Avian Family-Level Tree of Life
• New Lineage of Microbial Predators Adds Complexity to Reconstructing the Evolutionary Origin of Animals
• Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism
• Phylogenetic placement of environmental sequences using taxonomically reliable databases helps to rigorously assess dinophyte biodiversity in Bavarian lakes (Germany)
• Families, genera, and species of Botryosphaeriales
• They are young, and they are many: dating freshwater lineages in unicellular dinophytes
• Dinastridium verrucosum Baumeister from Bavaria (Germany) is a Borghiellacean Dinophyte (†Suessiales)
• Molecular phylogeny and biogeography of the land snail family Hygromiidae (Gastropoda: Helicoidea)
• Review of the hagfishes (Myxinidae) from the Galapagos Islands, with descriptions of four new species and their phylogenetic relationships
• Odorella benthonica gen. & sp. nov. (Pleurocapsales, Cyanobacteria): an odor and prolific toxin producer isolated from a California aqueduct
• Phenotypic Convergence Is Not Mirrored at the Protein Level in a Lizard Adaptive Radiation
• A phylogenomic analysis of turtles
• AN END-TO-END SEVERE THUNDERSTORM FORECASTING SYSTEM IN AUSTRALIA: OVERVIEW AND TRAINING ISSUES
• Ocrepeira klamt sp. n. (Araneae: Araneidae), a novel spider species from an Andean páramo in Colombia
• High cryptic diversity in the kleptoparasitic genus Hyalorisia Dall, 1889 (Littorinimorpha: Capulidae) with the description of nine new species from the Indo-West Pacific
• Evolutionary history of Sundaland shrews (Eulipotyphla: Soricidae:Crocidura) with a focus on Borneo
• Novel Fusarium mutualists of two Euwallacea species infesting Acacia crassicarpa in Indonesia
• Ancient Divergence Driven by Geographic Isolation and Ecological Adaptation in Forest Dependent Sundaland Tree Squirrels
• Molecular phylogeny and biogeography of the land snail genusMonacha(Gastropoda, Hygromiidae)
• Species Delineation Within the Euwallacea fornicatus (Coleoptera: Curculionidae) Complex Revealed by Morphometric and Phylogenetic Analyses
• Mitogenomic phylogeny of mud snails of the mostly Atlantic/Mediterranean genusTritia(Gastropoda: Nassariidae)
• Characterization of the complete chloroplast genome of Calophaca sinica Rehd.
• Systematics of the Neotropical spider genera Jalapyphantes and Selenyphantes and the circumscription of the Pocobletus clade (Araneae: Linyphiidae)
• Peronospora aquilegiicola sp. nov., the downy mildew affecting columbines in the UK is an invasive species from East Asia
• Articulating “Archiannelids”: Phylogenomics and Annelid Relationships, with Emphasis on Meiofaunal Taxa
• ViroidDB: a database of viroids and viroid-like circular RNAs
• Bacterial and fungal communities and their predictive functional profiles in kinema, a naturally fermented soybean food of India, Nepal and Bhutan
• One species, two developmental modes: a case of geographic poecilogony in marine gastropods
• Snails riding mantis shrimps: Ectoparasites evolved from ancestors living as commensals on the host’s burrow wall
• Mimopidae is the sister group to all other scolopendromorph centipedes (Chilopoda, Scolopendromorpha): a phylotranscriptomic approach
• Sorryatlanticus, you are not my type: molecular assessment splitsZophoscolex(Lumbricidae: Crassiclitellata) into French and Iberian genera
• Re-description of the loach species Leptobotia citrauratea (Teleostei, Botiidae), with the description of L. brachycephala from southern Zhejiang Province, China
• Phylogeography of Agathistoma (Turbinidae, Tegulinae) snails in tropical and southwestern Atlantic
• Hemimetabolous genomes reveal molecular basis of termite eusociality
• Hepatitis E virus in pork meat products and exposure assessment in Belgium
• Cryptic diversity and speciation in endemic Cytherissa (Ostracoda, Crustacea) from Lake Baikal
• The perils of online biogeographic databases: a case study with the ‘monospecific’ genus Aegina (Cnidaria, Hydrozoa, Narcomedusae)
• Evolutionary systematics of the viviparous gastropod Sermyla (Gastropoda: Cerithioidea: Thiaridae), with the description of a new species
• Lepiotaceous fungi of West Bengal, India: two new species of Leucoagaricus
• Proposal for a subdivision of the family Psathyrellaceae based on a taxon-rich phylogenetic analysis with iterative multigene guide tree
• Revision of the genus-group Hystricella R. T. Lowe, 1855 from Porto Santo (Madeira Archipelago), with descriptions of new recent and fossil taxa (Gastropoda, Helicoidea, Geomitridae)
• Three new cryptic Caribbean species in the Leucocoprinus heinemannii complex (Agaricaceae, Agaricales)
• Purple haze: Cryptic purple sequestrate Cortinarius in New Zealand
• Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome
• Does hunger lead to hybridization in a genus of sexually cannibalistic insects (Orthoptera: Prophalangopsidae)?
• Phylogeny, biogeography and classification of Teletisoptera (Blattaria: Isoptera)
• Geographic isolation and human-assisted dispersal in land snails: a Mediterranean story ofHelix borealisand its relatives (Gastropoda: Stylommatophora: Helicidae)
• Taming the beast: a revised classification of Cortinariaceae based on genomic data
• The complete chloroplast genome of Akebia longeracemosa (Lardizabalaceae)
• Improved molecular serogroup typing reveals locally circulating Leptospira serogroups in wildlife in Yamaguchi, Japan
• The origins and spread of domestic horses from the Western Eurasian steppes
• Plastomes of Betulaceae and phylogenetic implications
• Convergent evolution of complex structures for ant–bacterial defensive symbiosis in fungus-farming ants
• Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
• When the lights go out: the evolutionary fate of free‐living colorless green algae
• Reconstructing the genetic history of late Neanderthals
• Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi‐gene analyses, and a functional model for the origin of monocots
• A comprehensive generic‐level phylogeny of the sunflower family: Implications for the systematics of Chinese Asteraceae
• A higher‐level nuclear phylogenomic study of the carrot family (Apiaceae)
• Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica
• A diverse intrinsic antibiotic resistome from a cave bacterium
• Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction
• Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation
• Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent
• Human mitochondrial DNA lineages in Iron-Age Fennoscandia suggest incipient admixture and eastern introduction of farming-related maternal ancestry
• Ancient DNA reveals evidence of abundant aurochs (Bos primigenius) in Neolithic Northeast China
• The assembly of ant-farmed gardens: mutualism specialization following host broadening
• A comprehensive genome-centred taxonomy for agrobacteria and rhizobia in the Bartonellaceae and Rhizobiaceae families
• Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria
• Dense sampling of bird diversity increases power of comparative genomics
• Evolutionary history of enigmatic bears in the Tibetan Plateau–Himalaya region and the identity of the yeti
• The physiology and habitat of the last universal common ancestor
• An updated phylogeny of the metallo-β-lactamases
• Structures of single‐layer β‐sheet proteins evolved from β‐hairpin repeats
• The Cambrian cirratuliform Iotuba denotes an early annelid radiation
• Phenotypic evolution in marmoset and tamarin monkeys (Cebidae, Callitrichinae) and a revised genus-level classification
• Combining genomic, phenotypic and Sanger sequencing data to elucidate the phylogeny of the two-clawed spiders (Dionycha)
• Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift
• Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics
• Rounding up the usual suspects: a standard target‐gene approach for resolving the interfamilial phylogenetic relationships of ecribellate orb‐weaving spiders with a new family‐rank classification (Araneae, Araneoidea)
• Psychrophilic fungi from the world’s roof, II: Species delimitation within an integrative taxonomic framework
• The Comoros Show the Earliest Austronesian Gene Flow into the Swahili Corridor
• Recurrent deletions in the SARS-CoV-2 spike glycoprotein drive antibody escape
• Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
• Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies
• An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic
• Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies
• Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
• Convergent evolution of caffeine in plants by co-option of exapted ancestral enzymes
• Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant
• Genomic characteristics and clinical effect of the emergent SARS-CoV-2 B.1.1.7 lineage in London, UK: a whole-genome sequencing and hospital-based cohort study
• The SARS-CoV-2 Lambda variant exhibits enhanced infectivity and immune resistance
• SARS-CoV-2 Lambda variant exhibits higher infectivity and immune resistance
• The mysterious Spotted Green Pigeon and its relation to the Dodo and its kindred
• A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
• Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents
• Idiosyncratic Genome Degradation in a Bacterial Endosymbiont of Periodical Cicadas
• A Molecular Phylogeny for the Order Clathrinida Rekindles and Refines Haeckel's Taxonomic Proposal for Calcareous Sponges
• A computational screen for alternative genetic codes in over 250,000 genomes
• Matrilineal population structure and distribution of the Angolan giraffe in the Namib desert and beyond
• The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features
• Interrogating Genomic-Scale Data for Squamata (Lizards, Snakes, and Amphisbaenians) Shows no Support for Key Traditional Morphological Relationships
• Ovulate Cones of Schizolepidopsis ediae sp. nov. Provide Insights into the Evolution of Pinaceae
• Origin of Equisetum: Evolution of horsetails (Equisetales) within the major euphyllophyte clade Sphenopsida
• Higher-Level Phylogeny and Reclassification of Lampyridae (Coleoptera: Elateroidea)
• No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon
• An updated tribal classification of Lamiaceae based on plastome phylogenomics
• A phylogeny of kingfishers reveals an Indomalayan origin and elevated rates of diversification on oceanic islands
• Adaptation and conservation insights from the koala genome
• Combining molecular and geographical data to infer the phylogeny of Lamiales and its dispersal patterns in and out of the tropics
• Picuris Pueblo oral history and genomics reveal continuity in US Southwest
• Exploring Mobile Genetic Elements in Vibrio cholerae
• Widespread ancient whole‐genome duplications in Malpighiales coincide with Eocene global climatic upheaval
• OrthoMaM v10: Scaling-Up Orthologous Coding Sequence and Exon Alignments with More than One Hundred Mammalian Genomes
• Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
• Mitochondria branch within Alphaproteobacteria
• The evolutionary origin of host association in the Rickettsiales
• Deep mitochondrial origin outside the sampled alphaproteobacteria
• Phylogenetic analyses with systematic taxon sampling show that mitochondria branch within Alphaproteobacteria
• Dating Alphaproteobacteria evolution with eukaryotic fossils
• The evolutionary history of manatees told by their mitogenomes
• Rapid Laurasian diversification of a pantropical bird family during the Oligocene–Miocene transition
• A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths
• Phylogeny based on ultra-conserved elements clarifies the evolution of rails and allies (Ralloidea) and is the basis for a revised classification
• Determining the Position of Storks on the Phylogenetic Tree of Waterbirds by Retroposon Insertion Analysis
• Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements
• Phylogenomic Reconstruction Sheds Light on New Relationships and Timescale of Rails (Aves: Rallidae) Evolution
• Whole genome phylogeny of Gallus: introgression and data-type effects
• Whole-Genome Analyses Resolve the Phylogeny of Flightless Birds (Palaeognathae) in the Presence of an Empirical Anomaly Zone
• Mitochondrial Genomes from New Zealand’s Extinct Adzebills (Aves: Aptornithidae: Aptornis) Support a Sister-Taxon Relationship with the Afro-Madagascan Sarothruridae
• Revising the phylogenetic position of the extinct Mascarene Parrot Mascarinus mascarin (Linnaeus 1771) (Aves: Psittaciformes: Psittacidae)
• The industrial melanism mutation in British peppered moths is a transposable element
• The Tree of Life and a New Classification of Bony Fishes
• Illuminating Genetic Mysteries of the Dead Sea Scrolls
• Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots
• Origin and evolution of the genus Piper in Peninsular India
• Supersized Ribosomal RNA Expansion Segments in Asgard Archaea
• Origin of life: protoribosome forms peptide bonds and links RNA and protein dominated worlds
• Recombination is required for efficient HIV-1 replication and the maintenance of viral genome integrity
• Mitogenomic data indicate admixture components of Central-Inner Asian and Srubnaya origin in the conquering Hungarians
• Exploring the impact of morphology, multiple sequence alignment and choice of optimality criteria in phylogenetic inference: a case study with the Neotropical orb-weaving spider genus Wagneriana (Araneae: Araneidae)
• A mitogenomic timetree for Darwin’s enigmatic South American mammal Macrauchenia patachonica
• Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates
• The genomic history of the Aegean palatial civilizations
• Paleogenomics reveals independent and hybrid origins of two morphologically distinct wolf lineages endemic to Japan
• Phylogeography of ancient and modern brown bears from eastern Eurasia
• Genomic analysis of a novel Neanderthal from Mezmaiskaya Cave provides insights into the genetic relationships of Middle Palaeolithic populations
• Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
• Global patterns of Rhododendron diversity: The role of evolutionary time and diversification rates
• Emerging evolutionary paradigms in antibiotic discovery
• Taxonomic updates to Artocarpus subgenus Pseudojaca (Moraceae), with a particular focus on the taxa in Singapore
• Kiwi genome provides insights into evolution of a nocturnal lifestyle
• Biogeographic problem-solving reveals the Late Pleistocene translocation of a short-faced bear to the California Channel Islands
• Deep ocean seascape and Pseudotanaidae (Crustacea: Tanaidacea) diversity at the Clarion-Clipperton Fracture Zone
• Phylogenomic re-evaluation of Triaenonychoidea (Opiliones : Laniatores), and systematics of Triaenonychidae, including new families, genera and species
• A spectacular new species of Hyloscirtus (Anura: Hylidae) from the Cordillera de Los Llanganates in the eastern Andes of Ecuador
• Convergent Loss of Chemoreceptors across Independent Origins of Slave-Making in Ants
• Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding
• A new species of glass sponge-associated zoantharian, Vitrumanthus sankalpi, from a seamount in the western Andaman sea
• A novel pleuromutilin antibacterial compound, its binding mode and selectivity mechanism
• The Organelle Genomes in the Photosynthetic Red Algal Parasite Pterocladiophila hemisphaerica (Florideophyceae, Rhodophyta) Have Elevated Substitution Rates and Extreme Gene Loss in the Plastid Genome
• The evolution of tinamous (Palaeognathae: Tinamidae) in light of molecular and combined analyses
• The complete mitochondrial genome of the scab mite Psoroptes cuniculi (Arthropoda: Arachnida) provides insights into Acari phylogeny
• Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus cartwrightianus cytotypes
• Using ultraconserved elements to reconstruct the termite tree of life
• The incidence and pattern of copollinator diversification in dioecious and monoecious figs
• Vision using multiple distinct rod opsins in deep-sea fishes
• Endosymbiosis undone by stepwise elimination of the plastid in a parasitic dinoflagellate
• Core genes in diverse dinoflagellate lineages include a wealth of conserved dark genes with unknown functions
• Phylogeny and evolutionary history of Pinaceae updated by transcriptomic analysis
• Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms
• Parallel Molecular Evolution in Pathways, Genes, and Sites in High-Elevation Hummingbirds Revealed by Comparative Transcriptomics
• Caribbean Myotis (Chiroptera, Vespertilionidae), with description of a new species from Trinidad and Tobago
• A new species of terrestrial-breeding frog (Amphibia, Craugastoridae, Pristimantis) from high elevations of the Pui Pui Protected Forest in central Peru
• Recent introduction of a chytrid fungus endangers Western Palearctic salamanders
• Copy number variations with adaptive potential in caribou ( Rangifer tarandus ): genome architecture and new annotated genome assembly
• A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA
• Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials
• First global molecular phylogeny and biogeographical analysis of two arachnid orders (Schizomida and Uropygi) supports a tropical Pangean origin and mid‐Cretaceous diversification
• An analysis of Echinacea chloroplast genomes: Implications for future botanical identification
• Relationships of the New Guinean subspecies, Gymnorhina tibicen papuana, of the Australian Magpie: an assessment from DNA sequence data
• Phylogenomics of the Genus Mustela with description of a new species from China
• Phylogenomic reclassification of the world’s most venomous spiders (Mygalomorphae, Atracinae), with implications for venom evolution
• The spider tree of life: phylogeny of Araneae based on target‐gene analyses from an extensive taxon sampling
• Phylogeny of a cosmopolitan family of morphologically conserved trapdoor spiders (Mygalomorphae, Ctenizidae) using Anchored Hybrid Enrichment, with a description of the family, Halonoproctidae Pocock 1901
• Gene duplications and phylogenomic conflict underlie major pulses of phenotypic evolution in gymnosperms
• Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments
• Lilium brunneum (Liliaceae): a newly discovered species in north-western Yunnan, China
• Speciation in the deep: genomics and morphology reveal a new species of beaked whaleMesoplodon eueu
• Chloroplast Genomes and Comparative Analyses among Thirteen Taxa within Myrsinaceae s.str. Clade (Myrsinoideae, Primulaceae)
• Comparative plastid genomics of Pinus species: Insights into sequence variations and phylogenetic relationships
• Revisiting the phylogeny of Cephalopoda using complete mitochondrial genomes
• Comparative and phylogenetic analysis of the mitochondrial genomes in basal hymenopterans
• The phylogenetic position of dicyemid mesozoans offers insights into spiralian evolution
• Phylogeny, historical biogeography, and diversification of angiosperm order Ericales suggest ancient Neotropical and East Asian connections
• A global plastid phylogeny of the fern genus Asplenium (Aspleniaceae)
• Dead-End Hybridization in Walnut Trees Revealed by Large-Scale Genomic Sequence Data
• First confirmed record of the starfish family Paulasteriidae (Asteroidea: Forcipulatida) in the Atlantic Ocean
• Recognition of the genus Thaumatophyllum Schott − formerly Philodendron subg. Meconostigma (Araceae) − based on molecular and morphological evidence
• Assessing model sensitivity in ancestral area reconstruction using Lagrange: a case study using the Colchicaceae family
• The Evolution of Colchicaceae, with a Focus on Chromosome Numbers
• Measles virus and rinderpest virus divergence dated to the sixth century BCE
• Novel perspectives on plastome evolution in Onagraceae
• Mining viruses in public databases unveils the diversity within the Deltaflexiviridae family
• Molecular systematics and character evolution in the lichen family Ramalinaceae (Ascomycota: Lecanorales)
• Phylogeny and systematics of Sphaeriusidae (Coleoptera: Myxophaga): minute living fossils with underestimated past and present‐day diversity
• Outline of Fungi and fungus-like taxa – 2021
• Identifying the true number of specimens of the extinct blue antelope (Hippotragus leucophaeus)
• Evolutionary dynamics of the chromatophore genome in three photosynthetic Paulinella species
• A Comparative Analysis of Sonic Defences in Bombycoidea Caterpillars
• The genome of the Gulf pipefish enables understanding of evolutionary innovations
• Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome‐scale data set
• Phylogeny of the orb‐weaving spider family Araneidae (Araneae: Araneoidea)
• Papuan mitochondrial genomes and the settlement of Sahul
• The Complete Chloroplast Genomes of Three Cardiocrinum (Liliaceae) Species: Comparative Genomic and Phylogenetic Analyses
• Nuclear and mitochondrial DNA sequences from two Denisovan individuals
• Genomic analysis of the lectotype specimens of European Ulva rigida and Ulva lacinulata (Ulvaceae, Chlorophyta) reveals the ongoing misapplication of names
• Ancient DNA of Phoenician remains indicates discontinuity in the settlement history of Ibiza
• Phylogenetic and Structural Analysis of Miconazole Susceptibility in Malassezia pachydermatis Isolates From Dogs With Otitis Externa
• A phylogenetic analysis of scale insects (Hemiptera, Coccoidea) based on genomic and transcriptomic data
• Toward a clarified taxonomy of Parentocirrus hortualis (Ciliophora, Hypotrichia): an integrative analysis of ontogenesis, ultrastructure, morphology, and molecular phylogeny
• Biological Species Are Universal across Life’s Domains
• Description of a New Galapagos Giant Tortoise Species (Chelonoidis; Testudines: Testudinidae) from Cerro Fatal on Santa Cruz Island
• Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis
• Lichen chemistry is concordant with multilocus gene genealogy in the genus Cetrelia (Parmeliaceae, Ascomycota)
• Human de novo mutation rates from a four-generation pedigree reference
• Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
• Prokaryotic Argonaute Proteins as a Tool for Biotechnology
• Phylogenetic Relationships Within Tribe Hibisceae (Malvaceae) Reveal Complex Patterns of Polyphyly inHibiscusandPavonia
• CRISPR-Cas spacer acquisition is a rare event in human gut microbiome
• Mitochondrial DNA and the Y chromosome suggest the settlement of Madagascar by Indonesian sea nomad populations
• Role of Neopestalotiopsis rosae in causing root rot of strawberry in Beijing, China
• Neandertal and Denisovan DNA from Pleistocene sediments
• Streptomyces aridus sp. nov., isolated from a high altitude Atacama Desert soil and emended description of Streptomyces noboritoensis Isono et al. 1957
• Toward Modern Classification of Eustigmatophytes, Including the Description of Neomonodaceae Fam. Nov. and Three New Genera1
• Phylogenetic utility of ribosomal genes for reconstructing the phylogeny of five Chinese satyrine tribes (Lepidoptera, Nymphalidae)
• Mitogenomic phylogeny of Nassariidae (Neogastropoda: Buccinoidea)
• Proteorhodopsin insights into the molecular mechanism of vectorial proton transport
• First isolation of West Nile virus in Brazil
• Long-spurred Angraecum orchids and long-tongued sphingid moths on Madagascar: a time frame for Darwin’s predicted Xanthopan/Angraecum coevolution
• The complete mitochondrial genome of Temminck's ground pangolin (Smutsia temminckii; Smuts, 1832) and phylogenetic position of the Pholidota (Weber, 1904)
• Newly identified viral genomes in pangolins with fatal disease
• Viral Metagenomics Revealed Sendai Virus and Coronavirus Infection of Malayan Pangolins (Manis javanica)
• Mitochondrial genomes of African pangolins and insights into evolutionary patterns and phylogeny of the family Manidae
• Mesorhizobium bavaricum sp. nov. and Mesorhizobium monacense sp. nov., two novel Lotus-associated species harbouring symbiotic plasmids
• Five new species of Cortinarius (Cortinariaceae) from Yunnan, China, based on molecular and morphological evidence
• A lettuce receptor-like kinase recognizes the highly conserved heptapeptide motif within microbial Nep1-like proteins
• A genome-scale phylogeny of the kingdom Fungi
• The Evolution of Reverse Gyrase Suggests a Nonhyperthermophilic Last Universal Common Ancestor
• Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China
• Phylogeny of thejacchusgroup ofCallithrixmarmosets based on complete mitochondrial genomes
• Biosynthetic Gene Content of the ‘Perfume Lichens’ Evernia prunastri and Pseudevernia furfuracea
• Origin and cohabitation of arbuscular mycorrhizal fungi matter: forest-derived Gigaspora species are promising candidates for bioinoculant development in forest tree production
• Diagnostics for a troubled backbone: testing topological hypotheses of trapelioid lichenized fungi in a large-scale phylogeny of Ostropomycetidae (Lecanoromycetes)
• A revised classification of orders and families in the two major subclasses of Lecanoromycetes (Ascomycota) based on a temporal approach

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