James P. Balhoff

1. The Gene Ontology knowledgebase in 2023
   2023/03/03 by James P. Balhoff, Seth Carbon, Dustin Ebert +92 · 117 citations
   Biochemistry, Genetics and Molecular Biology · Computer Science · #Bioinformatics and Genomic Networks #Biomedical Text Mining and Ontologies #Computational Drug Discovery Methods
2. The Gene Ontology resource: enriching a GOld mine
   2020/12/03 by Seth Carbon, Eric Douglass, Benjamin M. Good +97 · 48 citations
   Biochemistry, Genetics and Molecular Biology · #Bioinformatics and Genomic Networks #Biomedical Text Mining and Ontologies #Genomics and Phylogenetic Studies
3. VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images
   2024/08/28 by Md. Hasan Maruf, Arka Daw, Maruf, M. +41 · 7 citations
   Computer Science · #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #Multimodal Machine Learning Applications
4. BioCLIP 2: Emergent Properties from Scaling Hierarchical Contrastive Learning
   2025/05/29 by Jianyang Gu, Samuel Stevens, Gu, Jianyang +28 · 17 citations
   Biochemistry, Genetics and Molecular Biology · #Biomedical Text Mining and Ontologies #Computation and Language (cs.CL) #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #Machine Learning (cs.LG)
5. Discovering Novel Biological Traits From Images Using Phylogeny-Guided Neural Networks
   2023/06/05 by Mohannad Elhamod, Elhamod, Mohannad, Mridul Khurana +33 · 2 citations
   Biochemistry, Genetics and Molecular Biology · Computer Science · Mathematics · #Cell Image Analysis Techniques #Computer Vision and Pattern Recognition (cs.CV) #Digital Imaging for Blood Diseases #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #Machine Learning (cs.LG) #Morphological variations and asymmetry #electronic engineering #information engineering
6. KG-Hub -- Building and Exchanging Biological Knowledge Graphs
   2023/01/31 by J. Harry Caufield, Caufield, J Harry, Tim Putman +49 · 2 citations
   Biochemistry, Genetics and Molecular Biology · #Artificial Intelligence (cs.AI) #Bioinformatics and Genomic Networks #Biomedical Text Mining and Ontologies #FOS: Biological sciences #FOS: Computer and information sciences #Gene expression and cancer classification #Machine Learning (cs.LG) #Quantitative Methods (q-bio.QM)
7. Hierarchical Conditioning of Diffusion Models Using Tree-of-Life for Studying Species Evolution
   2024/07/31 by Mridul Khurana, Khurana, Mridul, Arka Daw +27 · 2 citations
   Environmental Science · #Computer Vision and Pattern Recognition (cs.CV) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Populations and Evolution (q-bio.PE) #Species Distribution and Climate Change