Dongyu Xue

1. Diffusion Language Models Are Versatile Protein Learners
   2024/02/28 by Xinyou Wang, Wang, Xinyou, Zaixiang Zheng +9 · 16 citations
   Biochemistry, Genetics and Molecular Biology · Computer Science · #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Natural Language Processing Techniques #Topic Modeling
2. Structure-informed Language Models Are Protein Designers
   2023/02/03 by Zaixiang Zheng, Zheng, Zaixiang, Yifan Deng +9 · 5 citations
   Biochemistry, Genetics and Molecular Biology · #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #Protein Structure and Dynamics #RNA and protein synthesis mechanisms
3. Antigen-Specific Antibody Design via Direct Energy-based Preference Optimization
   2024/03/25 by Xiangxin Zhou, Zhou, Xiangxin, Dongyu Xue +9 · 5 citations
   Medicine · Biochemistry, Genetics and Molecular Biology · Immunology and Microbiology · #Monoclonal and Polyclonal Antibodies Research #Protein purification and stability #Immunotherapy and Immune Responses
4. ProteinBench: A Holistic Evaluation of Protein Foundation Models
   2024/09/10 by Fei Ye, Ye, Fei, Zaixiang Zheng +17 · 5 citations
   Biochemistry, Genetics and Molecular Biology · #Biomedical Text Mining and Ontologies