Berger, Bonnie
- AlphaFold Meets Flow Matching for Generating Protein Ensembles
2024/02/07 by Bowen Jing, Jing, Bowen, Bonnie Berger +3 · 3 voices · 38 citations
Chemistry · #q-bio.BM #cs.LG
- Dirichlet Flow Matching with Applications to DNA Sequence Design
2024/02/08 by H. Stärk, Stark, Hannes, Bowen Jing +11 · 25 citations
Computer Science · Biochemistry, Genetics and Molecular Biology · #Machine Learning and Algorithms #Genomics and Chromatin Dynamics #Cancer Genomics and Diagnostics
- EigenFold: Generative Protein Structure Prediction with Diffusion Models
2023/04/05 by Bowen Jing, Ezra Erives, Jing, Bowen +9 · 13 citations
Biochemistry, Genetics and Molecular Biology · #Bioinformatics and Genomic Networks #Biological Physics (physics.bio-ph) #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #FOS: Physical sciences #Gene Regulatory Network Analysis #Machine Learning (cs.LG) #Protein Structure and Dynamics
- Inferring Admixture Histories of Human Populations Using Linkage\n Disequilibrium
2012/11/01 by Po‐Ru Loh, Mark Lipson, Loh, Po-Ru +11 · 5 citations
Arts and Humanities · Biochemistry, Genetics and Molecular Biology · #FOS: Biological sciences #Forensic Anthropology and Bioarchaeology Studies #Forensic and Genetic Research #Populations and Evolution (q-bio.PE) #Race, Genetics, and Society
- Generative Modeling of Molecular Dynamics Trajectories
2024/09/26 by Bowen Jing, Jing, Bowen, H. Stärk +5 · 18 citations
Biochemistry, Genetics and Molecular Biology · Materials Science · Computer Science · #Protein Structure and Dynamics #Machine Learning in Materials Science #Topic Modeling
- Explicitly disentangling image content from translation and rotation\n with spatial-VAE
2019/09/25 by Tristan Bepler, Bepler, Tristan, Ellen D. Zhong +7 · 5 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · Engineering · #Advanced Electron Microscopy Techniques and Applications #Advanced Image Processing Techniques #Cell Image Analysis Techniques #Computational Physics and Python Applications #Computer Vision and Pattern Recognition (cs.CV) #Digital Media Forensic Detection #FOS: Biological sciences #FOS: Computer and information sciences #Image Processing Techniques and Applications #Machine Learning (cs.LG) #Quantitative Methods (q-bio.QM)
- Large-Margin Classification in Hyperbolic Space
2018/06/01 by Cho, Hyunghoon, DeMeo, Benjamin, Peng, Jian +1 · 3 citations
#FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning (stat.ML)
- Efficient moment-based inference of admixture parameters and sources of\n gene flow
2012/12/11 by Mark Lipson, Lipson, Mark, Po‐Ru Loh +10 · 1 citation
Biochemistry, Genetics and Molecular Biology · #FOS: Biological sciences #Forensic and Genetic Research #Genetic Associations and Epidemiology #Genetic diversity and population structure #Genomics and Phylogenetic Studies #Populations and Evolution (q-bio.PE)
- Evaluating multiple models using labeled and unlabeled data
2025/01/21 by Divya Shanmugam, Shuvom Sadhuka, Shanmugam, Divya +9 · 2 voices · 2 citations
Computer Science · Medicine · #Artificial Intelligence in Healthcare and Education #Computers and Society (cs.CY) #Explainable Artificial Intelligence (XAI) #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning and Data Classification
- Causally-guided Regularization of Graph Attention Improves Generalizability
2022/10/20 by Wu, Alexander P., Markovich, Thomas, Berger, Bonnie +2 · 1 citation
#FOS: Computer and information sciences #Machine Learning (cs.LG)
- AI-based Methods for Simulating, Sampling, and Predicting Protein Ensembles
2025/09/21 by Bowen Jing, Jing, Bowen, Bonnie Berger +3 · 2 citations
Biochemistry, Genetics and Molecular Biology · #Bioinformatics and Genomic Networks #Biological Physics (physics.bio-ph) #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #FOS: Physical sciences #Machine Learning (cs.LG)