Philip Hugenholtz
- GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
2021/09/08 by Donovan H. Parks, Donovan H Parks, Maria Chuvochina +5 · 167 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Microbial Community Ecology and Physiology #Probiotics and Fermented Foods
- GTDB-Tk v2: memory friendly classification with the genome taxonomy database
2022/10/07 by Pierre-Alain Chaumeil, Aaron J. Mussig, Philip Hugenholtz +1 · 108 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Gut microbiota and health #Microbial Community Ecology and Physiology
- Impact of Culture-Independent Studies on the Emerging Phylogenetic View of Bacterial Diversity
1998/09/15 by Philip Hugenholtz, Brett M. Goebel, Norman R. Pace · 39 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Microbial Community Ecology and Physiology #Protist diversity and phylogeny
- A complete domain-to-species taxonomy for Bacteria and Archaea
2020/04/27 by Donovan H. Parks, Maria Chuvochina, Pierre-Alain Chaumeil +3 · 50 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Genomics and Phylogenetic Studies #Legume Nitrogen Fixing Symbiosis #Probiotics and Fermented Foods
- A unified catalog of 204,938 reference genomes from the human gut microbiome
2020/07/20 by Alexandre Almeida, Stephen Nayfach, Miguel Boland +10 · 36 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · Medicine · #Clostridium difficile and Clostridium perfringens research #Gut microbiota and health #Probiotics and Fermented Foods
- SeqCode: a nomenclatural code for prokaryotes described from sequence data
2022/09/19 by Brian P. Hedlund, Maria Chuvochina, Philip Hugenholtz +11 · 2 voices · 22 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Microbial Community Ecology and Physiology #Bacterial Identification and Susceptibility Testing
- Greengenes2 unifies microbial data in a single reference tree
2023/07/27 by Daniel McDonald, Yueyu Jiang, Metin Balaban +22 · 1 voice · 22 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Gut microbiota and health #Microbial Community Ecology and Physiology #Species Distribution and Climate Change
- Microbial solutions must be deployed against climate catastrophe
2024/01/01 by Raquel S. Peixoto, Christian R. Voolstra, Lisa Y. Stein +15 · 1 voice · 2 citations
Energy · Social Sciences · #Global Energy and Sustainability Research #Climate Change Communication and Perception
- An evolutionary timescale for Bacteria calibrated using the Great Oxidation Event
2023/08/11 by Adrián Davín, Ben J. Woodcroft, Rochelle M. Soo +16 · 1 voice · 2 citations
Environmental Science · Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Microbial Community Ecology and Physiology #Genomics and Phylogenetic Studies #Geology and Paleoclimatology Research
- Proposal of <i>Patescibacterium danicum</i> gen. nov., sp. nov. in the ubiquitous bacterial phylum <i>Patescibacteriota</i> phyl. nov.
2024/11/18 by Zuzanna Dutkiewicz, Caitlin M. Singleton, Mantas Sereika +9 · 2 voices · 1 citation
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Genomics and Phylogenetic Studies #Plant Pathogens and Fungal Diseases #Microbial Community Ecology and Physiology
- Microbial solutions must be deployed against climate catastrophe
2024/11/11 by Raquel S. Peixoto, Raquel Peixoto, Christian R. Voolstra +20 · 1 voice · 1 citation
Energy · Social Sciences · #Climate Change Communication and Perception #Global Energy and Sustainability Research
- Microbial solutions must be deployed against climate catastrophe
2024/11/11 by Raquel S. Peixoto, Christian R. Voolstra, Lisa Y. Stein +15 · 3 voices
Energy · Social Sciences · #Global Energy and Sustainability Research #Climate Change Communication and Perception
- The MiDAS global genome catalog: 53,501 long-read MAGs representing all core prokaryotic genera in the global activated sludge microbiome
2026/07/13 by Lei Liu, Caitlin M. Singleton, Rasmus Hansen Kirkegaard +11 · 1 voice
Environmental Science · Biochemistry, Genetics and Molecular Biology · #Wastewater Treatment and Nitrogen Removal #Genomics and Phylogenetic Studies #Microbial Community Ecology and Physiology