Boomsma, Wouter

1. BEND: Benchmarking DNA Language Models on biologically meaningful tasks
   2023/11/21 by Frederikke Isa Marin, Marin, Frederikke Isa, Felix Teufel +11 · 9 citations
   Biochemistry, Genetics and Molecular Biology · #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #Machine Learning (cs.LG) #Machine Learning in Bioinformatics #RNA and protein synthesis mechanisms
2. A survey and benchmark of high-dimensional Bayesian optimization of discrete sequences
   2024/06/07 by González-Duque, Miguel, Michael, Richard, Bartels, Simon +3 · 9 citations
   #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning (stat.ML)
3. Kermut: Composite kernel regression for protein variant effects
   2024/04/09 by Groth, Peter Mørch, Kerrn, Mads Herbert, Olsen, Lars +2 · 8 citations
   #Biomolecules (q-bio.BM) #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG)
4. A Continuous Relaxation for Discrete Bayesian Optimization
   2024/04/26 by Michaël Richard, Simon Bartels, Michael, Richard +11 · 3 citations
   Computer Science · Decision Sciences · #Advanced Bandit Algorithms Research #Advanced Multi-Objective Optimization Algorithms #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning (stat.ML) #Machine Learning and Algorithms
5. Zero-shot protein stability prediction by inverse folding models: a free energy interpretation
   2025/06/05 by Jes Frellsen, Maher M. Kassem, Frellsen, Jes +11 · 2 voices · 2 citations
   #cs.LG #cs.AI #q-bio.BM #stat.ML
6. Internal-Coordinate Density Modelling of Protein Structure: Covariance Matters
   2023/02/27 by Marloes Arts, Arts, Marloes, Jes Frellsen +3 · 1 voice · 1 citation
   Biochemistry, Genetics and Molecular Biology · Chemistry · Computer Science · Materials Science · #Biomolecules (q-bio.BM) #Enzyme Structure and Function #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Mass Spectrometry Techniques and Applications #Protein Structure and Dynamics #cs.LG #q-bio.BM
7. Implicit Variational Inference for High-Dimensional Posteriors
   2023/10/10 by Uppal, Anshuk, Stensbo-Smidt, Kristoffer, Boomsma, Wouter +1 · 1 citation
   #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning (stat.ML)