Giovanni Bussi
- PLUMED 2: New feathers for an old bird
2013/09/29 by Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi +2 · 111 citations
Biochemistry, Genetics and Molecular Biology · Chemistry · Materials Science · #Protein Structure and Dynamics #Advanced NMR Techniques and Applications #Machine Learning in Materials Science
- The role of nucleobase interactions in RNA structure and dynamics
2014/10/29 by Sandro Bottaro, Francesco Di Palma, Giovanni Bussi · 1 voice · 5 citations
Biochemistry, Genetics and Molecular Biology · Physics and Astronomy · #Origins and Evolution of Life #Protein Structure and Dynamics #RNA and protein synthesis mechanisms
- PLUMED Tutorials: a collaborative, community-driven learning ecosystem
2024/11/29 by Gareth A. Tribello, Tribello, Gareth A., Massimiliano Bonomi +124 · 1 voice · 5 citations
Computer Science · Decision Sciences · Engineering · Psychology · #Chemical Physics (physics.chem-ph) #Computational Physics (physics.comp-ph) #FOS: Physical sciences #Innovative Teaching and Learning Methods #Open Education and E-Learning #Physics Education (physics.ed-ph)
- MDRefine: A Python package for refining molecular dynamics trajectories with experimental data
2024/11/12 by Ivan Gilardoni, Valerio Piomponi, Thorben Fröhlking +1 · 2 voices · 1 citation
Biochemistry, Genetics and Molecular Biology · Physics and Astronomy · #Protein Structure and Dynamics #Spectroscopy and Quantum Chemical Studies #Advanced Chemical Physics Studies
- RNA Dynamics and Interactions Revealed through Atomistic Simulations
2025/07/11 by Olivier Languin–Cattoën, Giovanni Bussi, Languin-Cattoën, Olivier +1 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · #Biomolecules (q-bio.BM) #Chemical Physics (physics.chem-ph) #FOS: Biological sciences #FOS: Physical sciences
- Characterizing RNA oligomers using Stochastic Titration Constant-pH Metadynamics simulations
2024/10/21 by Tomás F. D. Silva, Giovanni Bussi, Silva, Tomas F. D. +1 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · #Biological Physics (physics.bio-ph) #Biomolecules (q-bio.BM) #Chemical Physics (physics.chem-ph) #FOS: Biological sciences #FOS: Physical sciences #RNA and protein synthesis mechanisms
- Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges
2025/11/04 by Giuseppe Sacco, Giovanni Bussi, Sacco, Giuseppe +3 · 2 voices · 2 citations
Biochemistry, Genetics and Molecular Biology · Physics and Astronomy · #Biological Physics (physics.bio-ph) #Biomolecules (q-bio.BM) #Computational Physics (physics.comp-ph) #FOS: Biological sciences #FOS: Physical sciences #Machine Learning in Bioinformatics #RNA and protein synthesis mechanisms #RNA modifications and cancer #physics.bio-ph #physics.comp-ph #q-bio.BM
- Ensemble refinement of mismodeled cryo-EM RNA structures using all-atom simulations
2025/05/16 by Elisa Posani, Pavel Janoš, Daniel B. Haack +4 · 1 voice · 2 citations
Biochemistry, Genetics and Molecular Biology · #RNA and protein synthesis mechanisms #Advanced Electron Microscopy Techniques and Applications #RNA modifications and cancer
- Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16
2025/11/08 by Rachael C. Kretsch, Elisa Posani, Eugene F. Baulin +48 · 2 voices · 2 citations
Biochemistry, Genetics and Molecular Biology · #RNA and protein synthesis mechanisms #Advanced Electron Microscopy Techniques and Applications #Protein Structure and Dynamics