Paul Denny
- UniProt: the Universal Protein Knowledgebase in 2023
2022/11/21 by Alex Bateman, Maria-Jesus Martin, María Martin +128 · 178 citations
Biochemistry, Genetics and Molecular Biology · Chemistry · #Advanced Proteomics Techniques and Applications #Genomics and Phylogenetic Studies #Machine Learning in Bioinformatics
- UniProt: the universal protein knowledgebase in 2021
2020/11/02 by Alex Bateman, María Martin, Sandra Orchard +97 · 75 citations
Biochemistry, Genetics and Molecular Biology · Chemistry · #Genomics and Phylogenetic Studies #Advanced Proteomics Techniques and Applications #Machine Learning in Bioinformatics
- UniProt: the Universal Protein Knowledgebase in 2025
2024/11/18 by Alex Bateman, María Martin, Sandra Orchard +96 · 99 citations
Biochemistry, Genetics and Molecular Biology · #Biomedical Text Mining and Ontologies #Genetics, Bioinformatics, and Biomedical Research #Genomics and Rare Diseases
- Computing Education in the Era of Generative AI
2024/01/18 by Paul Denny, James Prather, Brett A. Becker +7 · 23 citations
Computer Science · Social Sciences · #Online Learning and Analytics #Ethics and Social Impacts of AI #Teaching and Learning Programming
- Programming Is Hard -- Or at Least It Used to Be: Educational Opportunities And Challenges of AI Code Generation
2022/12/02 by Brett A. Becker, Paul Denny, Becker, Brett A. +9 · 22 citations
Computer Science · Psychology · #Teaching and Learning Programming #Online Learning and Analytics #Educational Games and Gamification
- CodeHelp: Using Large Language Models with Guardrails for Scalable Support in Programming Classes
2023/08/14 by Mark Liffiton, Liffiton, Mark, Brad E. Sheese +5 · 20 citations
Computer Science · #Computers and Society (cs.CY) #FOS: Computer and information sciences #Online Learning and Analytics #Software Engineering Research #Software Engineering Techniques and Practices
- “It’s Weird That it Knows What I Want”: Usability and Interactions with Copilot for Novice Programmers
2023/08/23 by James Prather, Brent N. Reeves, Paul Denny +6 · 11 citations
Computer Science · #Online Learning and Analytics #Software Engineering Research #Teaching and Learning Programming
- Open Source Language Models Can Provide Feedback: Evaluating LLMs' Ability to Help Students Using GPT-4-As-A-Judge
2024/05/08 by Charles Koutcheme, Nicola Dainese, Koutcheme, Charles +9 · 7 citations
Social Sciences · #Artificial Intelligence in Law
- Evaluating Language Models for Generating and Judging Programming Feedback
2024/07/05 by Charles Koutcheme, Nicola Dainese, Koutcheme, Charles +11 · 6 citations
Computer Science · #Software Engineering Techniques and Practices #Software Engineering Research #Advanced Software Engineering Methodologies
- Can We Trust AI-Generated Educational Content? Comparative Analysis of Human and AI-Generated Learning Resources
2023/06/18 by Paul Denny, Denny, Paul, Hassan Khosravi +7 · 3 citations
Computer Science · #Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Human-Computer Interaction (cs.HC) #Online Learning and Analytics #Text Readability and Simplification #Topic Modeling
- "Like a Nesting Doll": Analyzing Recursion Analogies Generated by CS Students using Large Language Models
2024/03/14 by Seth Bernstein, Bernstein, Seth, Paul Denny +10 · 4 citations
Psychology · #Artificial Intelligence (cs.AI) #Computation and Language (cs.CL) #FOS: Computer and information sciences #Human-Computer Interaction (cs.HC) #Innovative Teaching and Learning Methods
- Decoding Logic Errors: A Comparative Study on Bug Detection by Students and Large Language Models
2023/11/27 by Stephen MacNeil, MacNeil, Stephen, Paul Denny +13 · 3 citations
Computer Science · #Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Human-Computer Interaction (cs.HC) #Software Engineering Research #Software System Performance and Reliability #Software Testing and Debugging Techniques
- The UniProt website API: facilitating programmatic access to protein knowledge
2025/05/07 by Leonardo Jose da Costa Gonzales, Emily H Bowler-Barnett, Daniel L Rice +98 · 4 citations
- Promptly: Using Prompt Problems to Teach Learners How to Effectively Utilize AI Code Generators
2023/07/31 by Paul Denny, Juho Leinonen, Denny, Paul +11 · 2 citations
Computer Science · Psychology · #Artificial Intelligence (cs.AI) #Educational Games and Gamification #FOS: Computer and information sciences #Human-Computer Interaction (cs.HC) #Software Engineering Research #Teaching and Learning Programming
- Leveraging LLM Tutoring Systems for Non-Native English Speakers in Introductory CS Courses
2024/11/05 by Ismael Villegas Molina, Audria Montalvo, Molina, Ismael Villegas +7 · 3 citations
Computer Science · #FOS: Computer and information sciences #Human-Computer Interaction (cs.HC) #Intelligent Tutoring Systems and Adaptive Learning #Natural Language Processing Techniques #Text Readability and Simplification
- From Automation to Cognition: Redefining the Roles of Educators and Generative AI in Computing Education
2024/12/16 by Haoran Feng, Andrew Luxton-Reilly, Feng, Tony Haoran +5 · 2 citations
Computer Science · #Big Data and Digital Economy #Computability, Logic, AI Algorithms #Computers and Society (cs.CY) #FOS: Computer and information sciences #Online Learning and Analytics
- Breaking the Programming Language Barrier: Multilingual Prompting to Empower Non-Native English Learners
2024/12/17 by James Prather, Brent N. Reeves, Prather, James +24 · 3 citations
Computer Science · Arts and Humanities · #Teaching and Learning Programming #EFL/ESL Teaching and Learning #Second Language Learning and Teaching
- Exploring Iterative Enhancement for Improving Learnersourced Multiple-Choice Question Explanations with Large Language Models
2023/09/19 by Qiming Bao, Bao, Qiming, Juho Leinonen +15 · 1 citation
Computer Science · #Artificial Intelligence (cs.AI) #Computation and Language (cs.CL) #Explainable Artificial Intelligence (XAI) #FOS: Computer and information sciences #Online Learning and Analytics #Topic Modeling
- From Prompts to Propositions: A Logic-Based Lens on Student-LLM Interactions
2025/04/25 by Ali Alfageeh, Sadegh AlMahdi Kazemi Zarkouei, Alfageeh, Ali +21 · 3 citations
Computer Science · #Teaching and Learning Programming #Intelligent Tutoring Systems and Adaptive Learning #Online Learning and Analytics
- Benchmarking Educational Program Repair
2024/05/08 by Charles Koutcheme, Nicola Dainese, Koutcheme, Charles +9 · 1 citation
Psychology · #Artificial Intelligence (cs.AI) #Computation and Language (cs.CL) #Computers and Society (cs.CY) #FOS: Computer and information sciences #Human Resource Development and Performance Evaluation #Software Engineering (cs.SE)