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Structural basis of the mechanism and inhibition of a human ceramide synthase

2024/11/11 by Tomas C. Pascoa, A.C.W. Pike, Christofer S. Tautermann +10 · 1 voice · 3 citations
Biochemistry, Genetics and Molecular Biology · Materials Science · Chemistry · #Sphingolipid Metabolism and Signaling #Porphyrin and Phthalocyanine Chemistry #Carbohydrate Chemistry and Synthesis

paper · pdf · doi:10.1038/s41594-024-01414-3

Abstract

Ceramides are bioactive sphingolipids crucial for regulating cellular metabolism. Ceramides and dihydroceramides are synthesized by six ceramide synthase (CerS) enzymes, each with specificity for different acyl-CoA substrates. Ceramide with a 16-carbon acyl chain (C16 ceramide) has been implicated in obesity, insulin resistance and liver disease and the C16 ceramide-synthesizing CerS6 is regarded as an attractive drug target for obesity-associated disease. Despite their importance, the molecular mechanism underlying ceramide synthesis by CerS enzymes remains poorly understood. Here we report cryo-electron microscopy structures of human CerS6, capturing covalent intermediate and product-bound states. These structures, along with biochemical characterization, reveal that CerS catalysis proceeds through a ping-pong reaction mechanism involving a covalent acyl-enzyme intermediate. Notably, the product-bound structure was obtained upon reaction with the mycotoxin fumonisin B1, yielding insights into its inhibition of CerS. These results provide a framework for understanding CerS function, selectivity and inhibition and open routes for future drug discovery.

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