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A Data Augmentation Method for Fully Automatic Brain Tumor Segmentation

2022/02/13 by Yu Wang, Wang, Yu, Yarong Ji +3 · 1 citation
Computer Science · Neuroscience · #Advanced Neural Network Applications #Brain Tumor Detection and Classification #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #Machine Learning (cs.LG) #Medical Image Segmentation Techniques #electronic engineering #information engineering

paper · pdf · doi:10.48550/arxiv.2202.06344

openalex publication_date 2022/02/13 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

Automatic segmentation of glioma and its subregions is of great significance for diagnosis, treatment and monitoring of disease. In this paper, an augmentation method, called TensorMixup, was proposed and applied to the three dimensional U-Net architecture for brain tumor segmentation. The main ideas included that first, two image patches with size of 128 in three dimensions were selected according to glioma information of ground truth labels from the magnetic resonance imaging data of any two patients with the same modality. Next, a tensor in which all elements were independently sampled from Beta distribution was used to mix the image patches. Then the tensor was mapped to a matrix which was used to mix the one-hot encoded labels of the above image patches. Therefore, a new image and its one-hot encoded label were synthesized. Finally, the new data was used to train the model which could be used to segment glioma. The experimental results show that the mean accuracy of Dice scores are 91.32%, 85.67%, and 82.20% respectively on the whole tumor, tumor core, and enhancing tumor segmentation, which proves that the proposed TensorMixup is feasible and effective for brain tumor segmentation.

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