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On the Utilization of Unique Node Identifiers in Graph Neural Networks

2024/11/04 by Maya Bechler-Speicher, Moshe Eliasof, Bechler-Speicher, Maya +7 · 1 citation
Computer Science · #Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Machine Learning (cs.LG) #Machine Learning (stat.ML) #Neural Networks and Applications

paper · pdf · doi:10.48550/arxiv.2411.02271

openalex publication_date 2024/11/04 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

Graph Neural Networks have inherent representational limitations due to their message-passing structure. Recent work has suggested that these limitations can be overcome by using unique node identifiers (UIDs). Here we argue that despite the advantages of UIDs, one of their disadvantages is that they lose the desirable property of permutation-equivariance. We thus propose to focus on UID models that are permutation-equivariant, and present theoretical arguments for their advantages. Motivated by this, we propose a method to regularize UID models towards permutation equivariance, via a contrastive loss. We empirically demonstrate that our approach improves generalization and extrapolation abilities while providing faster training convergence. On the recent BREC expressiveness benchmark, our proposed method achieves state-of-the-art performance compared to other random-based approaches.

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