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ConnectomeDiffuser: Generative AI Enables Brain Network Construction from Diffusion Tensor Imaging

2025/05/23 by Xuhang Chen, Yanyan Shen, Michael K. Ng +13 · 1 voice
Biochemistry, Genetics and Molecular Biology · Computer Science · Medicine · Neuroscience · #Advanced Neuroimaging Techniques and Applications #Artificial Intelligence (cs.AI) #Computer Vision and Pattern Recognition (cs.CV) #FOS: Biological sciences #FOS: Computer and information sciences #Functional Brain Connectivity Studies #Neurons and Cognition (q-bio.NC) #Topological and Geometric Data Analysis #cs.AI #cs.CV #q-bio.NC

paper · pdf · doi:10.48550/arxiv.2505.22683

openalex publication_date 2025/05/23 · arxiv published 2025/05/23 · arxiv updated 2025/05/23 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

Brain network analysis plays a crucial role in diagnosing and monitoring neurodegenerative disorders such as Alzheimer's disease (AD). Existing approaches for constructing structural brain networks from diffusion tensor imaging (DTI) often rely on specialized toolkits that suffer from inherent limitations: operator subjectivity, labor-intensive workflows, and restricted capacity to capture complex topological features and disease-specific biomarkers. To overcome these challenges and advance computational neuroimaging instrumentation, ConnectomeDiffuser is proposed as a novel diffusion-based framework for automated end-to-end brain network construction from DTI. The proposed model combines three key components: (1) a Template Network that extracts topological features from 3D DTI scans using Riemannian geometric principles, (2) a diffusion model that generates comprehensive brain networks with enhanced topological fidelity, and (3) a Graph Convolutional Network classifier that incorporates disease-specific markers to improve diagnostic accuracy. ConnectomeDiffuser demonstrates superior performance by capturing a broader range of structural connectivity and pathology-related information, enabling more sensitive analysis of individual variations in brain networks. Experimental validation on datasets representing two distinct neurodegenerative conditions demonstrates significant performance improvements over other brain network methods. This work contributes to the advancement of instrumentation in the context of neurological disorders, providing clinicians and researchers with a robust, generalizable measurement framework that facilitates more accurate diagnosis, deeper mechanistic understanding, and improved therapeutic monitoring of neurodegenerative diseases such as AD.

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