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Molecular phylogenetics and biogeography reveal the origin of cherries (Prunus subg. Cerasus, Rosaceae)

2023/10/31 by Yan‐Feng Song, Yan-Feng Song, Cheng Zhang +6 · 7 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Biogeography #Biological dispersal #Biology #Botany #Ecology #Genetic diversity and population structure #Genetics #Genus #Phylogenetic tree #Phylogenetics #Plant Diversity and Evolution #Plant and animal studies #Population #Prunus cerasus #Sour cherry #Subgenus #Subtropics

paper · doi:10.1093/botlinnean/boad060

published in Botanical Journal of the Linnean Society 204(4), 304-315 (Oxford University Press)

openalex publication_date 2023/10/31 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/22

Abstract

Abstract Cherries (subg. Cerasus) belong to Prunus s.l. (Rosaceae) and are widely distributed in temperate and subtropical regions of the Northern Hemisphere. Given its ornamental and edible functions, it is a hugely preferred germplasm resource for human societies. However, the interspecific phylogenetic relationships, divergence times, and routes of this subgenus remain unclear. To reveal its enigmatic and intricate evolutionary history, we newly sequenced 12 subg. Cerasus species, reconstructed the plastome phylogeny with 24 previously published subg. Cerasus species. This study supports that subg. Cerasus split into five clades, among which P. mahaleb is the basal group of subg. Cerasus; P. campanulata is genetically distantly related to P. cerasoides and is not recommended for treatment as a variety of the latter; P. subhirtella is involved in the speciation of P. yedoensis. Molecular dating and ancestral area reconstructions infer that subg. Cerasus originated in the Eastern Mediterranean–Central Asia before 11.57 Mya (95% HPD = 5.34–19.1 Mya) and subsequently spread into the Qinghai-Tibetan Plateau (QTP) and adjacent regions. The first dispersal event of modern subg. Cerasus was facilitated by ‘out-of-QTP’, colonizing North America across the Bering Land Bridge and re-dispersing into Europe from the Late Miocene to Pliocene and forming the initial distribution pattern of extant subg. Cerasus in the Pliocene; The end of the Quaternary glacial period witnessed a second dispersal event, and core subg. Cerasus population diversity flourished radially in its separate refugia during the Late Pleistocene.

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