vix.ing · top · new · best · stats · spec

Poland-Scheraga models and the DNA denaturation transition

2003/02/28 by C. Richard, A. J. Guttmann · 5 citations
Biochemistry, Genetics and Molecular Biology · Engineering · Materials Science · Physics and Astronomy · #Material Dynamics and Properties #Muon and positron interactions and applications #Theoretical and Computational Physics #cond-mat.stat-mech #q-bio

paper · pdf · doi:10.1023/b:joss.0000022370.48118.8b

published as J. Stat. Phys. 115 (2004), 943-965 · 23 pages, 4 figures; v2: new section 2.4, changes in introduction and conclusion; v3: major changes, version as published

arxiv created 2004/05/19 · arxiv updated 2009/11/30

Abstract

Poland-Scheraga models were introduced to describe the DNA denaturation transition. We give a rigorous and refined discussion of a family of these models. We derive possible scaling functions in the neighborhood of the phase transition point and review common examples. We introduce a self-avoiding Poland-Scheraga model displaying a first order phase transition in two and three dimensions. We also discuss exactly solvable directed examples. This complements recent suggestions as to how the Poland-Scheraga class might be extended in order to display a first order transition, which is observed experimentally.

Cited by