2023/10/06 by Andrew F. Luo, Margaret M. Henderson, Luo, Andrew F. +5 · 8 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Cell Image Analysis Techniques #FOS: Biological sciences #FOS: Computer and information sciences #Machine Learning (cs.LG) #Multimodal Machine Learning Applications #Neurons and Cognition (q-bio.NC)
paper · pdf · doi:10.48550/arxiv.2310.04420
openalex publication_date 2023/10/06 · openalex created_date 2024/04/10 · openalex updated_date 2026/07/28
Understanding the functional organization of higher visual cortex is a central focus in neuroscience. Past studies have primarily mapped the visual and semantic selectivity of neural populations using hand-selected stimuli, which may potentially bias results towards pre-existing hypotheses of visual cortex functionality. Moving beyond conventional approaches, we introduce a data-driven method that generates natural language descriptions for images predicted to maximally activate individual voxels of interest. Our method -- Semantic Captioning Using Brain Alignments ("BrainSCUBA") -- builds upon the rich embedding space learned by a contrastive vision-language model and utilizes a pre-trained large language model to generate interpretable captions. We validate our method through fine-grained voxel-level captioning across higher-order visual regions. We further perform text-conditioned image synthesis with the captions, and show that our images are semantically coherent and yield high predicted activations. Finally, to demonstrate how our method enables scientific discovery, we perform exploratory investigations on the distribution of "person" representations in the brain, and discover fine-grained semantic selectivity in body-selective areas. Unlike earlier studies that decode text, our method derives voxel-wise captions of semantic selectivity. Our results show that BrainSCUBA is a promising means for understanding functional preferences in the brain, and provides motivation for further hypothesis-driven investigation of visual cortex.