Relationships Among Stop Codon Usage Bias, Its Context, Isochores, and Gene Expression Level in Various Eukaryotes

2005/09/13 by Jingchun Sun, Ming Chen, Jinlin Xu +1 · 19 citations
Biochemistry, Genetics and Molecular Biology · #RNA and protein synthesis mechanisms #RNA modifications and cancer #Genomics and Phylogenetic Studies

paper · doi:10.1007/s00239-004-0277-3

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• A Comprehensive Analysis of Codon Usage Patterns in Blunt Snout Bream (Megalobrama amblycephala) Based on RNA-Seq Data. [europepmc]
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• Selective forces and mutational biases drive stop codon usage in the human genome: a comparison with sense codon usage. [europepmc]
• Running the Stop Sign: Readthrough of a Premature UAG Termination Signal in the Translation of a Zebrafish (Danio rerio) Taurine Biosynthetic Enzyme. [europepmc]
• Humanin Prevents Age-Related Cognitive Decline in Mice and is Associated with Improved Cognitive Age in Humans. [europepmc]
• Forces acting on codon bias in malaria parasites. [europepmc]
• Evaluation and optimisation of unnatural amino acid incorporation and bioorthogonal bioconjugation for site-specific fluorescent labelling of proteins expressed in mammalian cells. [europepmc]
• The novel aminoglycoside, ELX-02, permits CTNSW138X translational read-through and restores lysosomal cystine efflux in cystinosis. [europepmc]
• Enabling large-scale genome editing at repetitive elements by reducing DNA nicking. [europepmc]
• Selection Shapes Synonymous Stop Codon Use in Mammals. [europepmc]
• Sensing through Non-Sensing Ocular Ion Channels. [europepmc]
• Identification of permissive amber suppression sites for efficient non-canonical amino acid incorporation in mammalian cells. [europepmc]
• Disrupting upstream translation in mRNAs is associated with human disease. [europepmc]
• Codon usage bias. [europepmc]
• 3S-DB identifies an RNA repository facilitating stop codon readthrough for selenocysteine insertion and selenoproteome expansion. [europepmc]