Large-scale analysis of the Alu Ya5 and Yb8 subfamilies and their contribution to human genomic diversity

2001/08/01 by Marion L. Carroll, Marion L Carroll, Astrid M. Roy‐Engel +26 · 26 citations
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Chromosomal and Genetic Variations #Genomics and Phylogenetic Studies #RNA and protein synthesis mechanisms

paper · doi:10.1006/jmbi.2001.4847

Cited by

• LINE-1 Retrotransposition Activity in Human Genomes
• Complete MHC haplotype sequencing for common disease gene mapping. [europepmc]
• Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements. [europepmc]
• Natural genetic variation caused by transposable elements in humans. [europepmc]
• Genome-wide analysis of the human Alu Yb-lineage. [europepmc]
• Analysis of the human Alu Ye lineage. [europepmc]
• Under the genomic radar: the stealth model of Alu amplification. [europepmc]
• Tracking Alu evolution in New World primates. [europepmc]
• Whole genome computational comparative genomics: A fruitful approach for ascertaining Alu insertion polymorphisms. [europepmc]
• dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans. [europepmc]
• Estimating the age of retrotransposon subfamilies using maximum likelihood. [europepmc]
• Modeling neutral evolution of Alu elements using a branching process. [europepmc]
• Mobile element scanning (ME-Scan) by targeted high-throughput sequencing. [europepmc]
• LINE-1 retrotransposition activity in human genomes. [europepmc]
• LINE-1 elements in structural variation and disease. [europepmc]
• The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes. [europepmc]
• Genome-wide evolutionary and functional analysis of the Equine Repetitive Element 1: an insertion in the myostatin promoter affects gene expression. [europepmc]
• DNA methylation variation of human-specific Alu repeats. [europepmc]
• Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. [europepmc]
• Insertion and deletion polymorphisms of the ancient AluS family in the human genome. [europepmc]
• A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms. [europepmc]
• A human specific Alu DNA cassette is found flanking the genes of transcription factor AP2. [europepmc]
• Insertion of Telomeric Repeats in the Human and Horse Genomes: An Evolutionary Perspective. [europepmc]
• A pipeline for complete characterization of complex germline rearrangements from long DNA reads. [europepmc]
• Evidence for multi-copy Mega-NUMTs in the human genome. [europepmc]
• Emerging Opportunities to Study Mobile Element Insertions and Their Source Elements in an Expanding Universe of Sequenced Human Genomes. [europepmc]