Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

2013/05/03 by Chen-Shan Chin, David H Alexander, David H. Alexander +13 · 2 citations
Biochemistry, Genetics and Molecular Biology · Environmental Science · #Algorithm #Bacteriophages and microbial interactions #Biology #Computational biology #Computer science #DNA #DNA sequencer #DNA sequencing #Database #Directed acyclic graph #Gene #Genetics #Genome #Genomics and Phylogenetic Studies #Hybrid genome assembly #Illumina dye sequencing #RNA and protein synthesis mechanisms #Reference genome #Sequence assembly #Shotgun sequencing #Single molecule real time sequencing #Whole genome sequencing #Workflow

paper · doi:10.1038/nmeth.2474

openalex publication_date 2013/05/03 · crossref created 2013/05/03 · crossref issued 2013/05/05 · crossref published 2013/05/05 · crossref published-online 2013/05/05 · crossref published-print 2013/06/01 · crossref deposited 2023/05/18 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/31 · crossref indexed 2026/08/06

Citations

• A Whole-Genome Assembly of Drosophila
• Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology
• A hybrid approach for the automated finishing of bacterial genomes
• The methylomes of six bacteria
• The Complete Genome Sequence of Escherichia coli K-12
• Origins of the E. coli Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany
• Hybrid error correction and de novo assembly of single-molecule sequencing reads

Cited by

• Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses
• DNA sequencing [wikipedia]