2001/07/13 by Ingo Muegge, Matthias Rarey · 1 citation
Computer Science · Chemistry · Medicine · #Computational Drug Discovery Methods #Docking (animal) #Protein–ligand docking #Virtual screening #Searching the conformational space for docking #Computer science #Computational biology #Artificial intelligence #Drug discovery #Chemistry #Protein structure #Biology #Biochemistry #Medicine
paper · doi:10.1002/0471224413.ch1
openalex publication_date 2001/07/13 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/29
Chapter 1 is a tutorial on small molecules docking to proteins primarily. Determination of the structure of ligand-receptor complexes is important to computer-aided drug design. Topics covered include: Algorithms for Molecular Docking The Docking Problem Placing Fragments and Rigid Molecules Flexible Ligand Docking Handling Protein Flexibility Docking of Combinatorial Libraries Shape and Chemical Complementary Scores Force Field Scoring Empirical Scoring Functions Knowledge-Based Scoring Functions Comparing Scoring Functions in Docking Experiments – Consensus scoring Protein Data Preparation Ligand Database Preparation Docking Calculation Post-Processing Docking as Virtual Screening Tool Docking as a Ligand Design Tool