2019/01/23 by Céline Scornavacca, Khalid Belkhir, Jimmy Lopez +4 · 1 citation
Biochemistry, Genetics and Molecular Biology · Agricultural and Biological Sciences · #Genomics and Phylogenetic Studies #Chromosomal and Genetic Variations #Machine Learning in Bioinformatics
paper · pdf · doi:10.1093/molbev/msz015
openalex publication_date 2019/01/23 · openalex created_date 2025/10/10 · openalex updated_date 2026/08/01
We present version 10 of OrthoMaM, a database of orthologous mammalian markers. OrthoMaM is already 11 years old and since the outset it has kept on improving, providing alignments and phylogenetic trees of high-quality computed with state-of-the-art methods on up-to-date data. The main contribution of this version is the increase in the number of taxa: 116 mammalian genomes for 14,509 one-to-one orthologous genes. This has been made possible by the combination of genomic data deposited in Ensembl complemented by additional good-quality genomes only available in NCBI. Version 10 users will benefit from pipeline improvements and a completely redesigned web-interface.