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STM Image Analysis using Autoencoders

2025/01/23 by Peter Binev, Binev, Peter, Joshua Moorehead +8
Engineering · #65D40 #68T07 #FOS: Mathematics #G.1.10 #Industrial Vision Systems and Defect Detection #Numerical Analysis (math.NA)

paper · pdf · doi:10.48550/arxiv.2501.13283

openalex publication_date 2025/01/23 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

This study explores the application of Convolutional Autoencoders (CAEs) for analyzing and reconstructing Scanning Tunneling Microscopy (STM) images of various crystalline lattice structures. We developed two distinct CAE architectures to process simulated STM images of simple cubic, body-centered cubic (BCC), face-centered cubic (FCC), and hexagonal lattices. Our models were trained on 17×17 pixel patches extracted from 256×256 simulated STM images, incorporating realistic noise characteristics. We evaluated the models' performance using Mean Squared Error (MSE) and Structural Similarity (SSIM) index, and analyzed the learned latent space representations. The results demonstrate the potential of deep learning techniques in STM image analysis, while also highlighting challenges in latent space interpretability and full image reconstruction. This work lays the foundation for future advancements in automated analysis of atomic-scale imaging data, with potential applications in materials science and nanotechnology.

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