Phylogenetic reconciliation

2022/11/03 by Hugo Menet, Vincent Daubin, Éric Tannier · 1 citation
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Plant and animal studies #Insect symbiosis and bacterial influences #Genomics and Phylogenetic Studies

paper · pdf · doi:10.1371/journal.pcbi.1010621

openalex publication_date 2022/11/03 · openalex created_date 2025/10/10 · openalex updated_date 2026/08/01

Abstract

The article is intended to also serve as a wikipedia page

Citations

• Reconciliation of Gene and Species Trees With Polytomies
• Fast Algorithms for Reconciliation under Hybridization and Incomplete Lineage Sorting
• Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes
• Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
• Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades
• Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
• On the shape and fabric of human history
• Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
• Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
• Supertree Construction: Opportunities and Challenges
• Getting the Hologenome Concept Right: an Eco-Evolutionary Framework for Hosts and Their Microbiomes
• Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

Cited by

• Phylogenetic reconciliation [wikipedia]