2005/09/26 by A. Yu. Berezhnoy, Andrey Yu Berezhnoy, Steven Duplij
Biochemistry, Genetics and Molecular Biology · Chemistry · #DNA and Nucleic Acid Chemistry #RNA and protein synthesis mechanisms #q-bio.QM #thermodynamics and calorimetric analyses
paper · pdf · doi:10.1631/jzus.2005.b0948
published as Journal of Zhejiang University SCIENCE (2005) Vol. 6B, No. 10, pp.948-960 · 13 pages, 8 figures, PDF
openalex publication_date 2005/09/26 · arxiv created 2007/11/26 · arxiv updated 2009/12/01 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28
Various physical properties such as dipole moment, heat of formation and energy of the most stable formation of nucleotides and bases were calculated by PM3 (modified neglect of diatomic overlap, parametric method number 3) and AM1 (austin model 1) methods. As distinct from previous calculations, for nucleotides the interaction with neighbours is taken into account up to gradient of convergence equaling 1. The dependencies of these variables from the place in the codon and the determinative degree were obtained. The difference of these variables for codons and anticodons is shown.