Challenges and opportunities in sharing microbiome data and analyses

2023/10/02 by Curtis Huttenhower, ROBERT FINN, Robert D. Finn +2 · 1 voice
Computer Science · Decision Sciences · Environmental Science · #Microbial Community Ecology and Physiology #Research Data Management Practices #Scientific Computing and Data Management

paper · pdf · doi:10.1038/s41564-023-01484-x

crossref issued 2023/10/02 · crossref published 2023/10/02 · crossref published-online 2023/10/02 · openalex publication_date 2023/10/02 · crossref created 2023/10/02 · crossref deposited 2023/11/06 · openalex created_date 2025/10/10 · crossref indexed 2026/07/23 · openalex updated_date 2026/07/25

Citations

• The FAIR Guiding Principles for scientific data management and stewardship
• Performing Skin Microbiome Research: A Method to the Madness
• Zebrafish microbiome studies make waves
• The CARE Principles for Indigenous Data Governance
• Feature-based molecular networking in the GNPS analysis environment
• The Human Phenotype Ontology in 2021
• Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
• The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences

Discussions

• "There is thus a substantial need for interoperability standards and neutral archives analogous to the INSDC databases for sharing microbiome data products produced by diverse workflows ... avoiding t [bsky, 0 points, 0 comments]